PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp7g16670
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family ERF
Protein Properties Length: 306aa    MW: 34127.5 Da    PI: 5.5096
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp7g16670genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.11.3e-19160210255
        AP2   2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                +y+GVr ++ +g+++AeIrdp   + + +r++lg+f ta eAa+a+++a+ +l+g
  Tp7g16670 160 HYRGVRMRP-WGKFAAEIRDP---NrRGTRVWLGTFNTAIEAARAYDQAAFRLRG 210
                7********.**********9...4334*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.105.1E-32159219IPR001471AP2/ERF domain
SMARTSM003804.8E-35160224IPR001471AP2/ERF domain
PROSITE profilePS5103223.723160218IPR001471AP2/ERF domain
CDDcd000186.54E-29160218No hitNo description
SuperFamilySSF541712.88E-22160220IPR016177DNA-binding domain
PfamPF008474.8E-14160210IPR001471AP2/ERF domain
PRINTSPR003673.9E-10161172IPR001471AP2/ERF domain
PRINTSPR003673.9E-10184200IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000302Biological Processresponse to reactive oxygen species
GO:0001944Biological Processvasculature development
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009644Biological Processresponse to high light intensity
GO:0010200Biological Processresponse to chitin
GO:0051301Biological Processcell division
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MATPSEEASA LFFIKKHLLD EFSPLPTLTT NRWMNDSVAS DFSIFGSFDQ TGFNFAEFES  60
KPEIIDLVTP RFTESEISDF ELKPVIVSEV KAETSLASND SFTFKSNPRV VSGLVTQSNR  120
KPPLKIAPPN RTEWIQFATG NSLQPEQVPV PVVVSEEKRH YRGVRMRPWG KFAAEIRDPN  180
RRGTRVWLGT FNTAIEAARA YDQAAFRLRG SKAIVNFPLE VGMWKPRAGE NGQNKRKRDG  240
EEEEEGVTAA VGAKVLKTEE SSHKVESETS SLTAIDDWDM TGFLSMPLLS PLSSHPPCGY  300
PQLTVV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A5e-28159221163ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A8e-28159221466ATERF1
3gcc_A8e-28159221466ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:9756931}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00437DAPTransfer from AT4G17490Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp7g16670
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024004766.11e-149ethylene-responsive transcription factor 6
SwissprotQ8VZ911e-130EF103_ARATH; Ethylene-responsive transcription factor 6
TrEMBLA0A1J3J0J01e-164A0A1J3J0J0_NOCCA; Ethylene-responsive transcription factor 6
STRINGXP_006414222.11e-152(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17490.11e-110ethylene responsive element binding factor 6