PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp7g16360
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family HSF
Protein Properties Length: 469aa    MW: 51806.7 Da    PI: 4.6317
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp7g16360genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind116.31.9e-36371292103
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl+k+y+++ed++++ ++sws  +nsfvv+d+ ef++++LpkyFkh+nf+SFvRQLn+YgF+kv+ ++         weF+++ F +g+k+ll++i 
     Tp7g16360  37 FLSKTYDMVEDPSTDAIVSWSPANNSFVVWDPPEFSRSLLPKYFKHNNFSSFVRQLNTYGFRKVDPDR---------WEFANEGFLRGSKHLLKTIS 124
                   9********************999*****************************************999.........******************** PP

                   XXXXX CS
  HSF_DNA-bind  99 rkkse 103
                   r+ks+
     Tp7g16360 125 RRKSA 129
                   **986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.109.6E-4031121IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004152.4E-6233126IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467852.99E-3534126IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000561.1E-203760IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.6E-3237126IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.1E-207587IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434076100IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.1E-2088100IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009408Biological Processresponse to heat
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 469 aa     Download sequence    Send to blast
MDGVTGGESK SGEAVTAPLR NPHPATLLSA NALPPPFLSK TYDMVEDPST DAIVSWSPAN  60
NSFVVWDPPE FSRSLLPKYF KHNNFSSFVR QLNTYGFRKV DPDRWEFANE GFLRGSKHLL  120
KTISRRKSAQ GHGGSNPQSH QLSQGQGSMA VLSSCVEVGK FGLEEEVEQL KRDKNVLMQE  180
LVKLRQQQQS TDNKLQSMVK SLQAMEQRQQ QIMSFLAKAV QNPTFLSQFI QKQTDSNLHV  240
TEANKKRRLR DDTIAAAADE NHSHSDSHSS DALDGQIVKY KPLRSDSTKS MIWNMMKTDD  300
KFPFLDGFSS PNRVSGGTLQ EVLLPTTSGQ SQAYAPVVSS QPLSYLPSAS TSLPDTVLPT  360
ISGMPQLTQE SINDSPIENY MDTEKDISEA IVSPSPFLDG GSVPNQLDGI PQDLDIDELM  420
SNCDLFEEYL AESPVFGDET TLESSNTNGE HVDKLIEELG LLASETEQL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A9e-283512918123Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp7g16360
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat stress. {ECO:0000269|PubMed:7948881}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006414192.10.0heat stress transcription factor A-1a
SwissprotP411510.0HFA1A_ARATH; Heat stress transcription factor A-1a
TrEMBLV4LYA90.0V4LYA9_EUTSA; Uncharacterized protein
STRINGXP_006414192.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM151011619
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17750.10.0heat shock factor 1
Publications ? help Back to Top
  1. Hsu SF,Jinn TL
    AtHSBP functions in seed development and the motif is required for subcellular localization and interaction with AtHSFs.
    Plant Signal Behav, 2010. 5(8): p. 1042-4
    [PMID:20657173]
  2. Liu HC,Charng YY
    Common and distinct functions of Arabidopsis class A1 and A2 heat shock factors in diverse abiotic stress responses and development.
    Plant Physiol., 2013. 163(1): p. 276-90
    [PMID:23832625]
  3. Li S, et al.
    HEAT-INDUCED TAS1 TARGET1 Mediates Thermotolerance via HEAT STRESS TRANSCRIPTION FACTOR A1a-Directed Pathways in Arabidopsis.
    Plant Cell, 2014. 26(4): p. 1764-1780
    [PMID:24728648]
  4. Muench M,Hsin CH,Ferber E,Berger S,Mueller MJ
    Reactive electrophilic oxylipins trigger a heat stress-like response through HSFA1 transcription factors.
    J. Exp. Bot., 2016. 67(21): p. 6139-6148
    [PMID:27811081]