PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp7g11330
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family ERF
Protein Properties Length: 353aa    MW: 39793.4 Da    PI: 9.9335
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp7g11330genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.53.9e-19190240256
        AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                 y+GVr+++ +g+WvAeIr p++   r+r++lg+f tae+Aa a++ a+  l+ge
  Tp7g11330 190 LYRGVRQRH-WGKWVAEIRLPRN---RTRVWLGTFETAEQAAMAYDTAAYILRGE 240
                59******9.**********955...5************************9997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.17E-31189249No hitNo description
SuperFamilySSF541711.5E-22190248IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.105.6E-32190248IPR001471AP2/ERF domain
SMARTSM003801.4E-34190253IPR001471AP2/ERF domain
PROSITE profilePS5103222.8190247IPR001471AP2/ERF domain
PRINTSPR003673.7E-11191202IPR001471AP2/ERF domain
PfamPF008471.4E-12191240IPR001471AP2/ERF domain
PRINTSPR003673.7E-11213229IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    Send to blast
MNMEDQFLKK ETSFMHEKLL SSGFYGILSS STPPQLLGVP IILEGMKSHL PLSSPQSYFV  60
SPHELTSSIQ QSQVASVPWN FLESFPQSQR LDHHHPSKPP NLTLFLKEPK LLELSQSNSN  120
MIPYHNYIPN SLHQSDQNRN EWVEINKTLT NYPSKGFGNY WLSTTKTQPM KLASGTRTRK  180
VVQTTTPTKL YRGVRQRHWG KWVAEIRLPR NRTRVWLGTF ETAEQAAMAY DTAAYILRGE  240
YAHLNFPDLK HKLKSGSLRC MIASLLDAKI QQISSSQVIS SGDSPSPSPS PSSPKVGTSE  300
PKNNIKMEPG EVAMMKKQKS NKEVMEGDGV QLSRMPSLDM DLIWDALSLP HSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A4e-21189247160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A6e-21189247463ATERF1
3gcc_A6e-21189247463ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp7g11330
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL0355280.0AL035528.2 Arabidopsis thaliana DNA chromosome 4, BAC clone F18A5 (ESSA project).
GenBankAL1615370.0AL161537.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 37.
GenBankBT0297290.0BT029729.1 Arabidopsis thaliana At4g13620 mRNA, complete cds.
GenBankCP0026870.0CP002687.1 Arabidopsis thaliana chromosome 4 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018481819.10.0PREDICTED: ethylene-responsive transcription factor ERF062
SwissprotQ9SVQ00.0ERF62_ARATH; Ethylene-responsive transcription factor ERF062
TrEMBLV4P9H70.0V4P9H7_EUTSA; Uncharacterized protein
STRINGXP_010440558.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM107992534
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13620.10.0ERF family protein