PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp7g10210
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family ERF
Protein Properties Length: 225aa    MW: 25939.4 Da    PI: 9.8408
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp7g10210genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP237.65.7e-12116157351
        AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaark 51 
                 +GV++ k + +W A I++      +++++lg+f + eeAa+++++a+ 
  Tp7g10210 116 MRGVYY-K-NMKWQAAIKVE-----KRQIHLGTFSSQEEAARLYDRAAF 157
                79**96.5.7*********6.....6********************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS510329.466104170IPR001471AP2/ERF domain
SMARTSM003805.3E-6115174IPR001471AP2/ERF domain
PfamPF008471.8E-6115158IPR001471AP2/ERF domain
SuperFamilySSF541711.77E-9116159IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.3E-8117161IPR001471AP2/ERF domain
CDDcd000187.72E-12117162No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    Send to blast
MVSLRRRRLL GLCCGPNGYV TPLPFLTAEE MITGTPNPSD VAVYNPQKTP TKEGSRSQRQ  60
RTPSKYMQFR SEGISPDDSG SISPKWEQDI CDSDQPLKRR KRHRRKHIKN QEPCLMRGVY  120
YKNMKWQAAI KVEKRQIHLG TFSSQEEAAR LYDRAAFMCG REPNIELSEE DKQELKRQSW  180
EGFLACTRRT ITNKKPKRRM EQEEPDAGGV TDDKEINGIY GTPST
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp7g10210
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018451857.11e-109PREDICTED: ethylene-responsive transcription factor-like protein At4g13040 isoform X1
RefseqXP_018451859.11e-109PREDICTED: ethylene-responsive transcription factor-like protein At4g13040 isoform X1
RefseqXP_018451860.11e-109PREDICTED: ethylene-responsive transcription factor-like protein At4g13040 isoform X1
RefseqXP_018451861.11e-109PREDICTED: ethylene-responsive transcription factor-like protein At4g13040 isoform X1
SwissprotQ56XP98e-83ERFL1_ARATH; Ethylene-responsive transcription factor-like protein At4g13040
TrEMBLA0A397Y8531e-104A0A397Y853_BRACM; Uncharacterized protein
STRINGBo8g033910.11e-105(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM61892646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13040.13e-85ERF family protein