PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp7g03050 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
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Family | bHLH | ||||||||
Protein Properties | Length: 295aa MW: 33516.9 Da PI: 5.602 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 53.9 | 3.3e-17 | 39 | 88 | 2 | 55 |
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r +h+e E+rRR++iN++f+ L +++P++ ++K +Ka+ L +++eYI+ Lq Tp7g03050 39 RSKHSETEQRRRSKINERFQSLMDIIPQN----DQKRDKASFLLEVIEYIQFLQ 88 899*************************9....9*******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.280.10 | 1.6E-22 | 35 | 109 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 4.45E-19 | 36 | 115 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 16.602 | 37 | 87 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.1E-14 | 39 | 88 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.02E-13 | 41 | 92 | No hit | No description |
SMART | SM00353 | 1.4E-12 | 43 | 93 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006351 | Biological Process | transcription, DNA-templated | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 295 aa Download sequence Send to blast |
MNSPDLDEQL EADVYSNLPS HNDSSSGMMA TRRSRSSLRS KHSETEQRRR SKINERFQSL 60 MDIIPQNDQK RDKASFLLEV IEYIQFLQEK VQMYEGSQQM WYQAPTKLTP WRNNHDPVSE 120 VSDHPQTVNC YSSNDEVAAS SGLLSDMQNL VDPHAVDSEA STKFLQHIPI SAASSYVPTE 180 PPLHHDFWQP KPHCESLNCS AKESSNLDEK TSTVCSQRVR NSLAEALKSS GVNMSETTIS 240 VQLNLRKRRA SREYSVPAFA SEDNCNSIED EEGDSPTETR SFCKDSDHSL KRIRR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Positive brassinosteroid-signaling protein. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00534 | DAP | Transfer from AT5G38860 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp7g03050 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006405688.1 | 1e-161 | transcription factor BIM3 isoform X2 | ||||
Swissprot | Q9FMB6 | 1e-146 | BIM3_ARATH; Transcription factor BIM3 | ||||
TrEMBL | V4NL63 | 1e-159 | V4NL63_EUTSA; Uncharacterized protein | ||||
STRING | XP_006405688.1 | 1e-160 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM16131 | 11 | 14 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G38860.1 | 1e-142 | BES1-interacting Myc-like protein 3 |
Publications ? help Back to Top | |||
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