PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AT5G38860.1 | ||||||||
Common Name | BHLH141, BIM3, EN127, K15E6.40, K15E6.7 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | bHLH | ||||||||
Protein Properties | Length: 298aa MW: 33950.3 Da PI: 5.5977 | ||||||||
Description | BES1-interacting Myc-like protein 3 | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 56.9 | 3.7e-18 | 35 | 86 | 2 | 55 |
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r +h+e E+rRR++iN++f+ L +++P++ ++++K +Ka+ L +++eYI+ Lq AT5G38860.1 35 RSKHSETEQRRRSKINERFQSLMDIIPQN--QNDQKRDKASFLLEVIEYIHFLQ 86 899*************************6..4********************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 3.27E-20 | 31 | 114 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 4.10E-17 | 31 | 90 | No hit | No description |
PROSITE profile | PS50888 | 17.015 | 33 | 85 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 7.7E-22 | 35 | 106 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.2E-15 | 35 | 86 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.0E-13 | 39 | 91 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006351 | Biological Process | transcription, DNA-templated | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0000293 | anatomy | guard cell |
Sequence ? help Back to Top |
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Protein Sequence Length: 298 aa Download sequence Send to blast |
MNSHDIDDQL EADVYSNLPS RNDSSTGRRN RNSCRSKHSE TEQRRRSKIN ERFQSLMDII 60 PQNQNDQKRD KASFLLEVIE YIHFLQEKVH MYEDSHQMWY QSPTKLIPWR NSHGSVAEEN 120 DHPQIVKSFS SNDKVAASSG FLLDTYNSVN PDIDSAVSTK IPEHSPVSAV SSYLRTEPSL 180 QFVQHDFWQP KTSCGTINCF TNELLTSDEK TSASLSTVCS QRVLNTLTEA LKSSGVNMSE 240 TMISVQLSLR KREDREYSVA AFASEDNGNS IADEEGDSPT ETRSFCNDID HSQKRIRR |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
At.50495 | 0.0 | floral meristem |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | AT5G38860 | |||||
AtGenExpress | AT5G38860 |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Positive brassinosteroid-signaling protein. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00534 | DAP | 27203113 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AT5G38860.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Regulation -- Hormone ? help Back to Top | ||||||
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Source | Hormone | |||||
AHD | brassinosteroid |
Interaction -- BIND ? help Back to Top | ||||||
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Source | Intact With | Description | ||||
BIND | AT1G19350 | An unspecified isoform of BES1 interacts with BIM3. |
Interaction ? help Back to Top | ||||||
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Source | Intact With | |||||
BioGRID | AT1G19350 | |||||
IntAct | Search Q9FMB6 |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
T-DNA Express | AT5G38860 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AJ630499 | 0.0 | AJ630499.1 Arabidopsis thaliana mRNA for hypothetical protein, clone At5g38860. | |||
GenBank | BT033131 | 0.0 | BT033131.1 Arabidopsis thaliana unknown protein (At5g38860) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_198702.2 | 0.0 | BES1-interacting Myc-like protein 3 | ||||
Swissprot | Q9FMB6 | 0.0 | BIM3_ARATH; Transcription factor BIM3 | ||||
TrEMBL | D7MJT9 | 1e-175 | D7MJT9_ARALL; Uncharacterized protein | ||||
STRING | AT5G38860.1 | 0.0 | (Arabidopsis thaliana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM16131 | 11 | 14 | Representative plant | OGRP1360 | 17 | 47 |
Link Out ? help Back to Top | |
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Phytozome | AT5G38860.1 |
Entrez Gene | 833877 |
iHOP | AT5G38860 |
wikigenes | AT5G38860 |