PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp7g02270

Organism

Thellungiella parvula

Taxonomic ID

98039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella

Family

ZF-HD

Protein Properties

Length: 333aa MW: 35943.8 Da PI: 8.8421

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp7g02270	genome	thellungiella	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	106.1	2.2e-33	50	106	4	59
ZF-HD_dimer 4 vrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRrevee 59 ++YkeClkNhAa+lGgha+DGCgEfmps+++ ++++++kCaACgCHRnFHRre+++ Tp7g02270 50 FTYKECLKNHAAALGGHALDGCGEFMPSPSSIsTDPTSFKCAACGCHRNFHRRETDN 106 68************************9999899*****************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
TIGRFAMs	TIGR01566	6.7E-31	51	103	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Pfam	PF04770	1.5E-27	51	104	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	27.471	52	103	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDom	PD125774	2.0E-11	52	108	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamily	SSF46689	3.88E-17	183	254	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	3.4E-28	185	254	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01565	1.6E-24	193	250	IPR006455	Homeodomain, ZF-HD class

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 333 aa Download sequence Send to blast
MTPTTITTTT PKSPEPESET PTRIQPAKPI SFSNGIIKRH HHHPPPPLLF TYKECLKNHA 60 AALGGHALDG CGEFMPSPSS ISTDPTSFKC AACGCHRNFH RRETDNDSLI PPPPPSSVAT 120 AAIEYQPHHR HHPPPPPPPT QVAHPPPRSP NSSSPPPISS SYMLLSLSGT NNNNIAFSDL 180 NFSGNNHHQI GSRKRFRTKF SQFQKEKMHE FADRVGWKMQ KRDEDDVRDF CRQIGVDKSV 240 LKVWMHNNKN TFNRRDIPFS VVAGANDIRK IDNGGGGIHA PIPAVETNNN NNNNGGNELH 300 HSVSSGGGGG GGFDSDSGGG GVHGGNVNGS SSS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wh7_A	8e-20	192	251	16	75	ZF-HD homeobox family protein
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp7g02270

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009139922.1	1e-128	PREDICTED: zinc-finger homeodomain protein 10
Swissprot	Q9LHF0	1e-105	ZHD9_ARATH; Zinc-finger homeodomain protein 9
TrEMBL	M4EA37	1e-127	M4EA37_BRARP; Uncharacterized protein
STRING	Bra025644.1-P	1e-128	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2220	25	75

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G39760.1	6e-80	homeobox protein 23

Publications ? help Back to Top
Li B, et al. Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis. Plant Cell, 2018. 30(1): p. 178-195 [PMID:29317470]