PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp7g01600
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family C3H
Protein Properties Length: 441aa    MW: 48218.2 Da    PI: 8.7688
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp7g01600genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH23.59.4e-08121140626
                -SGGGGTS--TTTTT-SS-SS CS
    zf-CCCH   6 CrffartGtCkyGdrCkFaHg 26 
                C+f+ + G Ck Gd+C+F H+
  Tp7g01600 121 CKFWKA-GNCKKGDQCPFLHS 140
                ******.*************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003563.0E-6115141IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.94E-7117140IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.0E-5120140IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.511120142IPR000571Zinc finger, CCCH-type
PfamPF006422.6E-5121140IPR000571Zinc finger, CCCH-type
SMARTSM003201.9E-4146185IPR001680WD40 repeat
SuperFamilySSF509781.01E-42147194IPR017986WD40-repeat-containing domain
Gene3DG3DSA:2.130.10.104.6E-41148436IPR015943WD40/YVTN repeat-like-containing domain
PROSITE profilePS5029418.484153357IPR017986WD40-repeat-containing domain
PROSITE profilePS5008213.884153194IPR001680WD40 repeat
PfamPF117151.1E-4168201No hitNo description
PROSITE patternPS006780172186IPR019775WD40 repeat, conserved site
PRINTSPR003204.2E-8172186IPR020472G-protein beta WD-40 repeat
SMARTSM0032091225262IPR001680WD40 repeat
SuperFamilySSF509781.01E-42232437IPR017986WD40-repeat-containing domain
SMARTSM003208.8E-4270308IPR001680WD40 repeat
PfamPF004004.7E-5274308IPR001680WD40 repeat
PROSITE profilePS5008210.074292317IPR001680WD40 repeat
PRINTSPR003204.2E-8295309IPR020472G-protein beta WD-40 repeat
PROSITE patternPS006780295309IPR019775WD40 repeat, conserved site
SMARTSM003204.4E-5311348IPR001680WD40 repeat
PfamPF004000.0038313347IPR001680WD40 repeat
PROSITE profilePS500829.205318347IPR001680WD40 repeat
PRINTSPR003204.2E-8335349IPR020472G-protein beta WD-40 repeat
SMARTSM003203.9398435IPR001680WD40 repeat
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 441 aa     Download sequence    Send to blast
MNHKAPRRYS NGRNFGVERQ QDFAADIVPR RPYVPYDNRM NKGPNKWSRN LVWTASEGNR  60
SRGKNDNTYG STKPQVSGTG SGVSNQQWKN AEYGPRSSSV SDTRDWGSSD KVSPTTRECV  120
CKFWKAGNCK KGDQCPFLHS WSCFPGMVMV AALEGHKKDL KGIALPQGSD KLFSASSDGT  180
LRIWDCHTGQ CVHSVNLQAE AGSLISEGPW VFLGLPNAVK VFNVQTSKDL HLNGVVGQVH  240
AMTVGNGMLF AGTSSGSISV WKATDTESDP FTYLTSLEGH HSGEVTCFIV GGQQLYSGSV  300
DKTIKVWDLN TLECKMTLRQ HTDTVTSLLC WDQYLLSSSL DGTIKVWACS ENGSLKVTNT  360
RRQEQSVHTL SGMNDAEGKP IIFCSYQNGT VSIRDLPSFE ERGKMFSTNT IGTITIGPGG  420
LLFSGDKSGK LRVWSLAGTK V
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6g6m_A4e-1714143611323Tako8
6g6n_A4e-1714143611323Tako8
6g6n_B4e-1714143611323Tako8
6g6n_C4e-1714143611323Tako8
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp7g01600
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006405417.10.0zinc finger CCCH domain-containing protein 59
SwissprotQ9FKR90.0C3H59_ARATH; Zinc finger CCCH domain-containing protein 59
TrEMBLV4L8X30.0V4L8X3_EUTSA; Uncharacterized protein
STRINGXP_006405417.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40481848
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G40880.10.0C3H family protein