PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AT5G40880.1 | ||||||||
Common Name | MHK7.11, ZFWD3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | C3H | ||||||||
Protein Properties | Length: 472aa MW: 51297.5 Da PI: 9.1833 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 23.1 | 1.3e-07 | 146 | 170 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +k + C+f+ G Ck G++C+F H+ AT5G40880.1 146 PKKSVCNFWKD-GNCKKGEKCQFLHS 170 68999******.*************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 14.896 | 145 | 172 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 3.1E-6 | 145 | 171 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 4.0E-5 | 146 | 170 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.31E-6 | 147 | 170 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 6.3E-7 | 147 | 170 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF50978 | 5.43E-44 | 171 | 224 | IPR017986 | WD40-repeat-containing domain |
Gene3D | G3DSA:2.130.10.10 | 4.3E-41 | 176 | 471 | IPR015943 | WD40/YVTN repeat-like-containing domain |
SMART | SM00320 | 9.3E-4 | 176 | 215 | IPR001680 | WD40 repeat |
Pfam | PF00400 | 0.0046 | 182 | 215 | IPR001680 | WD40 repeat |
PROSITE profile | PS50082 | 12.814 | 183 | 224 | IPR001680 | WD40 repeat |
PROSITE profile | PS50294 | 17.139 | 183 | 387 | IPR017986 | WD40-repeat-containing domain |
PROSITE pattern | PS00678 | 0 | 202 | 216 | IPR019775 | WD40 repeat, conserved site |
PRINTS | PR00320 | 5.2E-7 | 202 | 216 | IPR020472 | G-protein beta WD-40 repeat |
SMART | SM00320 | 140 | 255 | 292 | IPR001680 | WD40 repeat |
SuperFamily | SSF50978 | 5.43E-44 | 262 | 470 | IPR017986 | WD40-repeat-containing domain |
SMART | SM00320 | 4.6E-4 | 300 | 338 | IPR001680 | WD40 repeat |
Pfam | PF00400 | 4.5E-5 | 302 | 338 | IPR001680 | WD40 repeat |
PROSITE profile | PS50082 | 10.308 | 308 | 347 | IPR001680 | WD40 repeat |
PROSITE pattern | PS00678 | 0 | 325 | 339 | IPR019775 | WD40 repeat, conserved site |
PRINTS | PR00320 | 5.2E-7 | 325 | 339 | IPR020472 | G-protein beta WD-40 repeat |
SMART | SM00320 | 0.0019 | 341 | 378 | IPR001680 | WD40 repeat |
Pfam | PF00400 | 0.0096 | 343 | 377 | IPR001680 | WD40 repeat |
PRINTS | PR00320 | 5.2E-7 | 365 | 379 | IPR020472 | G-protein beta WD-40 repeat |
SMART | SM00320 | 2 | 428 | 465 | IPR001680 | WD40 repeat |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0000293 | anatomy | guard cell | ||||
PO:0025195 | anatomy | pollen tube cell | ||||
PO:0025281 | anatomy | pollen | ||||
PO:0001016 | developmental stage | L mature pollen stage | ||||
PO:0001017 | developmental stage | M germinated pollen stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 472 aa Download sequence Send to blast |
MGHQSSWMKQ TVIDSVVQSS KVGVFSMFSM DYKAPRKYSH GRNFGVARQQ DFAADIVTRR 60 PYAPYDNGMK KGPNKLSRNL VWTSKEYKSP EGNRPRQNAA NGSAKPQVIG TGHRVSNQPR 120 KNAVYGPRSS SLSDTRGCGP RLNGSPKKSV CNFWKDGNCK KGEKCQFLHS WSCFPGLAMV 180 AALEGHKNDI KGIALPQGSD KLFSVSGDGT LLIWDCNSGQ CVRSINLQAE AGSLISEGPW 240 VFLGLPNAVK AFNVQNSKDV HLEGVVGQVH AMTAANGMLF AGTSSGSILV WKATDSESDP 300 FKYLTSLEGH HSGEVTCFVV GGEVLYSGSV DKTIKVWDLN TLQCRMTLKQ HIGTVTSLLC 360 WDKCLISSSL DGTIKLWACS ENESLKVVQT RKQELSVHTL CGMHDAEAKP IMFCSYQNGA 420 VGIFDLPSFE ERGKMFSTQT ICTLTIGPGG LLFSGDKSGN LRVWSLASGT KV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6g6m_A | 2e-18 | 171 | 469 | 6 | 322 | Tako8 |
6g6n_A | 2e-18 | 171 | 469 | 6 | 322 | Tako8 |
6g6n_B | 2e-18 | 171 | 469 | 6 | 322 | Tako8 |
6g6n_C | 2e-18 | 171 | 469 | 6 | 322 | Tako8 |
Search in ModeBase |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 42568233 | 0.0 | ||||
Genevisible | 249319_s_at | 1e-169 | ||||
Expression Atlas | AT5G40880 | - | ||||
AtGenExpress | AT5G40880 | - |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AT5G40880.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
T-DNA Express | AT5G40880 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT030400 | 0.0 | BT030400.1 Arabidopsis thaliana At5g40880 gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_198904.1 | 0.0 | WD-40 repeat family protein / zfwd3 protein (ZFWD3) | ||||
Swissprot | Q9FKR9 | 0.0 | C3H59_ARATH; Zinc finger CCCH domain-containing protein 59 | ||||
TrEMBL | A0A384LLK6 | 0.0 | A0A384LLK6_ARATH; Uncharacterized protein | ||||
TrEMBL | C0SVR8 | 0.0 | C0SVR8_ARATH; Uncharacterized protein At5g40880 (Fragment) | ||||
STRING | AT5G40880.1 | 0.0 | (Arabidopsis thaliana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4048 | 18 | 48 | Representative plant | OGRP1065 | 16 | 24 |
Link Out ? help Back to Top | |
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Phytozome | AT5G40880.1 |
Entrez Gene | 834089 |
iHOP | AT5G40880 |
wikigenes | AT5G40880 |