PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp7g00810
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family NAC
Protein Properties Length: 211aa    MW: 24576.6 Da    PI: 4.4018
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp7g00810genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM661.1e-2081401128
        NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk..kg 97 
                lp+GfrF+Ptd e+ +++L++k+ ++++++  v +e+ di++ +P+dLp   + +ek+wyf+s++  ++     +n   ++++Wk+ g+d++vl+   + 
  Tp7g00810   8 LPVGFRFRPTDCEISKYFLTRKALEQPMKARGVPEEChDIFSRHPRDLPG--YPREKHWYFYSRKLMNQV----TNN--SHSVWKQIGEDTDVLDPknNY 99 
                79****************************99999999***********4..35789******9877654....333..3578***********985455 PP

        NAM  98 elvglkktLvfy..........kgrapkgektdWvmheyrl 128
                +lvg+k+  ++             ++++++k +W+++e +l
  Tp7g00810 100 ALVGIKRPYTLVdheeesndmfLSDEEEPKKYNWFIDEISL 140
                5699998666664465555444378888889****999876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.97E-257157IPR003441NAC domain
PROSITE profilePS5100527.5728157IPR003441NAC domain
PfamPF023652.9E-119139IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 211 aa     Download sequence    Send to blast
MEPKLKALPV GFRFRPTDCE ISKYFLTRKA LEQPMKARGV PEECHDIFSR HPRDLPGYPR  60
EKHWYFYSRK LMNQVTNNSH SVWKQIGEDT DVLDPKNNYA LVGIKRPYTL VDHEEESNDM  120
FLSDEEEPKK YNWFIDEISL PLTVSDTDLV LCHVFRKKIK PEVVDVPIIE SESESGEEEE  180
EEEEEESVAA ETLDLLIEKD ENVLPPSPSP P
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp7g00810
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2325439e-61AC232543.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH006F04, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018444528.11e-100PREDICTED: NAC domain-containing protein 104-like
TrEMBLA0A078FEP17e-98A0A078FEP1_BRANA; BnaC06g13440D protein
TrEMBLA0A0D3CT737e-98A0A0D3CT73_BRAOL; Uncharacterized protein
TrEMBLV4LWE12e-97V4LWE1_EUTSA; Uncharacterized protein
STRINGBo6g064960.11e-98(Brassica oleracea)
STRINGXP_006405394.13e-98(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM86041736
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56520.11e-86NAC family protein