PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AT3G56520.1 | ||||||||
Common Name | T5P19_170 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | NAC | ||||||||
Protein Properties | Length: 175aa MW: 20378.7 Da PI: 4.9584 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 61.5 | 2.6e-19 | 8 | 141 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.. 95 lp+GfrF+ t+ e+ +++Lkkk+ g+++++ ++ +e+ di++ +P+dLp +e++wy+F++++ ++ t++ + W g++++vl+ AT3G56520.1 8 LPVGFRFRSTNCEISNYFLKKKALGQPMKARTIPEEChDIFSRHPHDLPGY--PSEEHWYYFCRKRDNQVTSNS------HNLWTPIGEETNVLDPkn 97 79****************************77777779***********43..4689*******9887655332......347***********9866 PP NAM 96 kgelvglkktLvfy...........kgrapkgektdWvmheyrl 128 +++lvg+k+ +++ +++++ k +W+m+e +l AT3G56520.1 98 NDALVGIKRRFTLIaqeeeesdnicLSDDEEALKYNWFMDEISL 141 6677**********665554443333666777799****99876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.22E-28 | 7 | 158 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 27.807 | 8 | 158 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.1E-10 | 9 | 140 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0007275 | Biological Process | multicellular organism development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 175 aa Download sequence Send to blast |
MEPTHRALPV GFRFRSTNCE ISNYFLKKKA LGQPMKARTI PEECHDIFSR HPHDLPGYPS 60 EEHWYYFCRK RDNQVTSNSH NLWTPIGEET NVLDPKNNDA LVGIKRRFTL IAQEEEESDN 120 ICLSDDEEAL KYNWFMDEIS LPQTVANTDW VLCHIFGKKT KPETTDLSTI DSESE |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 18410515 | 0.0 | ||||
Genevisible | 251691_at | 0.0 | ||||
Expression Atlas | AT3G56520 | - | ||||
AtGenExpress | AT3G56520 | - | ||||
ATTED-II | AT3G56520 | - |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AT3G56520.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
T-DNA Express | AT3G56520 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | DQ056627 | 0.0 | DQ056627.1 Arabidopsis thaliana no apical meristem family protein (At3g56520) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_191211.1 | 1e-131 | NAC (No Apical Meristem) domain transcriptional regulator superfamily protein | ||||
TrEMBL | Q9LXY8 | 1e-129 | Q9LXY8_ARATH; NAC (No Apical Meristem) domain transcriptional regulator superfamily protein | ||||
STRING | AT3G56520.1 | 1e-130 | (Arabidopsis thaliana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM8604 | 17 | 36 |
Link Out ? help Back to Top | |
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Phytozome | AT3G56520.1 |
Entrez Gene | 824819 |
iHOP | AT3G56520 |
wikigenes | AT3G56520 |
Publications ? help Back to Top | |||
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