PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp6g40630
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family bHLH
Protein Properties Length: 857aa    MW: 94653.1 Da    PI: 8.9004
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp6g40630genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.21.5e-085595954
               HHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
        HLH  9 ErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54
                r RR+ri ++f  L++++P  a      K++ +++L +A+ Y+k L
  Tp6g40630 55 ARERRHRISDRFKILQSMIPGgA------KMDTVSMLDEAISYVKFL 95
               699*****************966......****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.0784695IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.93E-1251104IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.7E-115299IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.67E-105299No hitNo description
SMARTSM003532.9E-1252101IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.5E-65695IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:3.40.50.3002.4E-4166186IPR027417P-loop containing nucleoside triphosphate hydrolase
SuperFamilySSF525405.61E-15170313IPR027417P-loop containing nucleoside triphosphate hydrolase
PfamPF136712.5E-13172281No hitNo description
Gene3DG3DSA:3.40.50.3002.9E-20187306IPR027417P-loop containing nucleoside triphosphate hydrolase
SuperFamilySSF529493.73E-17452589No hitNo description
PROSITE profilePS5115412.158456635IPR002589Macro domain
Gene3DG3DSA:3.40.220.102.7E-16468575No hitNo description
SMARTSM005067.9E-4468651IPR002589Macro domain
PfamPF016613.1E-6491574IPR002589Macro domain
Gene3DG3DSA:3.40.50.3002.4E-4576592IPR027417P-loop containing nucleoside triphosphate hydrolase
SuperFamilySSF541972.17E-38645821IPR011146HIT-like domain
PROSITE profilePS5108410.147665774IPR011146HIT-like domain
Gene3DG3DSA:3.30.428.105.7E-14666771IPR011146HIT-like domain
PfamPF119692.2E-27668778No hitNo description
PROSITE patternPS008920747765IPR019808Histidine triad, conserved site
PfamPF162781.0E-9783837IPR032566Aprataxin, C2HE/C2H2/C2HC zinc finger
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006790Biological Processsulfur compound metabolic process
GO:0009150Biological Processpurine ribonucleotide metabolic process
GO:0046983Molecular Functionprotein dimerization activity
GO:0047627Molecular Functionadenylylsulfatase activity
Sequence ? help Back to Top
Protein Sequence    Length: 857 aa     Download sequence    Send to blast
MDHSSFRSQN PNSSSTTSSS SSSFSGHKSN ITGNTKQSTS RSTSTLSTDP QSVAARERRH  60
RISDRFKILQ SMIPGGAKMD TVSMLDEAIS YVKFLKAQIW FHHNMLLFFN DDNESASSCT  120
YSPAGVREFE ARLFGVDDDY APVTETYSQG MPLLTVPDSE YPMWFEKAKQ IVVLLIGPPG  180
SGKSTFCDTV MQSSHRPWSR ICQDIINNGK AGNKAQCLKM AIKFLKEGKS VFIDRCNLDR  240
EQRSEFIKLG GPEVEVHAVV LELPAQVCIS RSVKRTGHEG HLQGGRAAAV VNKMLQSKEL  300
PNVNEGFSRI TFCYNDADVE TAVKAYSMLG PMDTLPSGCF GQKNSETKSQ PGIMKFFKKV  360
NAVPGSSSNG ATNATTRGAS EKTENSGVSP AKLGSADIVV PTLAFPSIST ADFQFDIEKA  420
SDIIVETAEE FLPKLGSARL VLVDLSHGSK ILSLVKAKAS RKNIDSGRFF TFVGDITKLH  480
SEGGLHCNVI ANAANWRLKP GGGGVNAAIF KMAGPDLEAA TRARANTLLP GKAVVVPLPC  540
TCPLHNAEEI THVIHVLGPN MNPNRPNYLN NDYTKGCKTL RDAYTSLFEG FLSVVQDQSK  600
LPKRTNQATM SDSGENIKKD SERNKKYKGA QDKAIASNLD SGSVDDNRDS GKKVNKGWSS  660
WALALHSIAM HPEKHENVVL ESSDDIVVIN DQYPKAKKHV LVLARQENLD GLEDVRKENL  720
QLLQEMYNVG LKWVKRFQEE DASLVFRLGY HSVPSMRQLH LHVISQDFES DNLKNKKHWN  780
SFTSSFFRDS VDVLEEVKSQ GKANVESEDV LKGELRCNRC RSAHPNIPKL KSHIRTCRSQ  840
YPHHLLQNNR LLARPES
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5lw0_A7e-9339659631231Basic helix-loop-helix, putative, expressed
5lw0_B7e-9339659631231Basic helix-loop-helix, putative, expressed
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp6g40630
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024011424.10.0LOW QUALITY PROTEIN: transcription factor bHLH140
SwissprotQ9M0410.0BH140_ARATH; Transcription factor bHLH140
TrEMBLD7M7380.0D7M738_ARALL; Basic helix-loop-helix family protein
STRINGBostr.6251s0101.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM948599
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G01310.10.0APRATAXIN-like
Publications ? help Back to Top
  1. Heyndrickx KS,Vandepoele K
    Systematic identification of functional plant modules through the integration of complementary data sources.
    Plant Physiol., 2012. 159(3): p. 884-901
    [PMID:22589469]