PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp6g38330 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
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Family | NAC | ||||||||
Protein Properties | Length: 573aa MW: 64055.2 Da PI: 4.3006 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 170.1 | 7.3e-53 | 9 | 136 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkge 98 l+pGfrFhPtdeelv +yLk+kv +k++++ ++i+ +diyk+ePwdLp k k+k+++ ewyfFs dkky++g+++nrat++gyWk+tgkd+e+ + +++ Tp6g38330 9 LAPGFRFHPTDEELVRYYLKRKVCNKPFKF-DAISVTDIYKSEPWDLPdKsKLKSRDLEWYFFSMLDKKYNNGSKTNRATEKGYWKTTGKDREIRN-GSR 106 579**************************9.99**************95347777888*************************************9.99* PP NAM 99 lvglkktLvfykgrapkgektdWvmheyrl 128 +vg+kktLv++ grap+ge+t+Wvmheyrl Tp6g38330 107 AVGMKKTLVYHMGRAPRGERTNWVMHEYRL 136 ****************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.57E-61 | 7 | 159 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 57.928 | 9 | 159 | IPR003441 | NAC domain |
Pfam | PF02365 | 6.0E-28 | 11 | 136 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009644 | Biological Process | response to high light intensity | ||||
GO:0009962 | Biological Process | regulation of flavonoid biosynthetic process | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 573 aa Download sequence Send to blast |
MGRGSVTSLA PGFRFHPTDE ELVRYYLKRK VCNKPFKFDA ISVTDIYKSE PWDLPDKSKL 60 KSRDLEWYFF SMLDKKYNNG SKTNRATEKG YWKTTGKDRE IRNGSRAVGM KKTLVYHMGR 120 APRGERTNWV MHEYRLTDEE LKKAGVPQDA FVLCRIFQKS GTGPKNGEQY GAPYLEEEWE 180 EDKMTLLPKQ DAFSEGLAVD DDVYVDIDDI DEKPENLVVY DAIPVQPNYC HGESSNNVES 240 GNYSDSGNYI PPGNYAVDSG GYFEQPIETF EEDQKPIIRD GSIQPCSLFP DEQIDCGLQD 300 ENVVNLETSD NNVFVADTCF SDIPVDANYL PDDEPFINPS NNLPLSDGLY LETNDLSSAL 360 QDDFNFEDYL NFFDDEDAQN LTLDVSQLLG SEDAPPDQEG LDQKPCPEEL KKEIPEGKEV 420 MEKKESGEGS SSKQDADVTD FDSASKYPFL KKASHMFGAI SAPPSFASQF QTKDAAIRLH 480 AAQSSGSVHV TAGMIRISNM TLAADTGMGW SYDKNGNLNV VLSFDLVQRD DAMSSPGSKT 540 GGTTATRTML IFMCLWVLLL SISFKIGTMV SAR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 6e-46 | 8 | 165 | 16 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 6e-46 | 8 | 165 | 16 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 6e-46 | 8 | 165 | 16 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 6e-46 | 8 | 165 | 16 | 171 | NO APICAL MERISTEM PROTEIN |
4dul_A | 6e-46 | 8 | 165 | 16 | 171 | NAC domain-containing protein 19 |
4dul_B | 6e-46 | 8 | 165 | 16 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP) (By similarity). Transcripition activator associated with the induction of genes related to flavonoid biosynthesis and required for the accumulation of anthocyanins in response to high light stress (PubMed:19887540). Plays a role in the regulation of 20S and 26S proteasomes in response to high light stress (PubMed:21889048). {ECO:0000250|UniProtKB:Q949N0, ECO:0000269|PubMed:19887540, ECO:0000269|PubMed:21889048}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00059 | PBM | Transfer from AT5G04410 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp6g38330 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By exposure to high light (PubMed:19887540). Induced by heat and methyl methanesulfonate (MMS) treatment (PubMed:17158162). {ECO:0000269|PubMed:17158162, ECO:0000269|PubMed:19887540}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK353079 | 0.0 | AK353079.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-20-K06. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006398899.1 | 0.0 | NAC domain-containing protein 78 | ||||
Swissprot | Q84K00 | 0.0 | NAC78_ARATH; NAC domain-containing protein 78 | ||||
TrEMBL | V4LD69 | 0.0 | V4LD69_EUTSA; Uncharacterized protein | ||||
STRING | XP_006398899.1 | 0.0 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3192 | 27 | 62 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G04410.1 | 0.0 | NAC domain containing protein 2 |