PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp6g34880 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
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Family | TCP | ||||||||
Protein Properties | Length: 257aa MW: 28942.2 Da PI: 7.0238 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 91.9 | 1.3e-28 | 33 | 100 | 3 | 70 |
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssa 70 g+kdrhsk++T +g+RdRR+Rlsa +a++++dLqd+LG+ ++sk i+WLl++a+ ++ l+ +++++ Tp6g34880 33 GGKDRHSKVCTVRGLRDRRIRLSAMTAIQLYDLQDRLGLSQPSKVIDWLLEAAQNDVDLLPPLQFPPG 100 78************************************************************966665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51369 | 28.534 | 34 | 92 | IPR017887 | Transcription factor TCP subgroup |
Pfam | PF03634 | 2.3E-26 | 34 | 96 | IPR005333 | Transcription factor, TCP |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009965 | Biological Process | leaf morphogenesis | ||||
GO:0030154 | Biological Process | cell differentiation | ||||
GO:0045962 | Biological Process | positive regulation of development, heterochronic |
Sequence ? help Back to Top |
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Protein Sequence Length: 257 aa Download sequence Send to blast |
MGIKQEGDDN YRASSLSTLR QNPRIVRVSR MFGGKDRHSK VCTVRGLRDR RIRLSAMTAI 60 QLYDLQDRLG LSQPSKVIDW LLEAAQNDVD LLPPLQFPPG FHPNLIAGAG ESFHGIFESF 120 DLGSCSSRTD DTIQTESLDL EKRKWVKPDE RNNLVHGFDI DHHFFSNSSQ SNKLYFPTSS 180 TYNSSSSYHY NLGHLQQSLL DQSGNVTVAL SNTNLNPPPA ETMSSLFPRY PTFLEGGQLQ 240 LFSSNSNSSK QKDHVEY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 5e-17 | 39 | 93 | 1 | 55 | Putative transcription factor PCF6 |
5zkt_B | 5e-17 | 39 | 93 | 1 | 55 | Putative transcription factor PCF6 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Plays a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164). Participates in ovule develpment (PubMed:25378179). {ECO:0000269|PubMed:17307931, ECO:0000269|PubMed:25378179}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00497 | DAP | Transfer from AT5G08070 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp6g34880 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | - | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC241004 | 1e-131 | AC241004.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB026J02, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013680410.1 | 1e-138 | transcription factor TCP17-like | ||||
Swissprot | Q9LEZ9 | 1e-109 | TCP17_ARATH; Transcription factor TCP17 | ||||
TrEMBL | A0A0D3B082 | 1e-135 | A0A0D3B082_BRAOL; Uncharacterized protein | ||||
TrEMBL | A0A3P6A8B2 | 1e-135 | A0A3P6A8B2_BRAOL; Uncharacterized protein | ||||
STRING | Bo3g004670.1 | 1e-135 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3576 | 27 | 63 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G08070.1 | 1e-100 | TCP domain protein 17 |
Publications ? help Back to Top | |||
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