PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp6g32020

Organism

Thellungiella parvula

Taxonomic ID

98039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella

Family

ERF

Protein Properties

Length: 242aa MW: 26774.8 Da PI: 4.8728

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp6g32020	genome	thellungiella	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	59.1	1e-18	60	110	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 + y+GVr + +g+Wv+eIr+p++ + r++lg+f t+e+Aa+a++ a+++++g Tp6g32020 60 PVYRGVRMRN-WGKWVSEIREPRK---KSRIWLGTFPTPEMAARAHDVAALSIKG 110 68***998.******843...6*********************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF00847	6.0E-13	60	110	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	23.459	61	118	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	8.8E-32	61	119	IPR001471	AP2/ERF domain
SMART	SM00380	4.8E-37	61	124	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	1.18E-21	61	119	IPR016177	DNA-binding domain
CDD	cd00018	3.02E-32	62	120	No hit	No description
PRINTS	PR00367	2.5E-10	62	73	IPR001471	AP2/ERF domain
PRINTS	PR00367	2.5E-10	84	100	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 242 aa Download sequence Send to blast
MVASVSESTF GEEYYTLHSE RVTQRLPPNS ASDSVSQESK AEQNENSKKT KRVKDSGKHP 60 VYRGVRMRNW GKWVSEIREP RKKSRIWLGT FPTPEMAARA HDVAALSIKG TSAILNFPEL 120 VESFPRPASL SPRDIQTAAL KAAHMEPTTS LTSSSSSSTS SLDSLVLVMD LSRTESEELG 180 EIVELPSLGA SYDVDSANVG NEFVFSDSVD YCLYPPPWGQ WSEDSYGYGI IPNFNQGLSW 240 DL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5wx9_A	1e-18	59	118	12	72	Ethylene-responsive transcription factor ERF096
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp6g32020

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006399666.1	1e-138	dehydration-responsive element-binding protein 3
Swissprot	Q9LYD3	1e-132	DREB3_ARATH; Dehydration-responsive element-binding protein 3
TrEMBL	A0A1J3G4S8	1e-144	A0A1J3G4S8_NOCCA; Dehydration-responsive element-binding protein 3
TrEMBL	A0A1J3H0D8	1e-144	A0A1J3H0D8_NOCCA; Dehydration-responsive element-binding protein 3
STRING	XP_006399666.1	1e-138	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM185	28	283

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G11590.1	1e-127	ERF family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Galuschka C,Schindler M,Bülow L,Hehl R AthaMap web tools for the analysis and identification of co-regulated genes. Nucleic Acids Res., 2007. 35(Database issue): p. D857-62 [PMID:17148485]