PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp6g26970

Organism

Thellungiella parvula

Taxonomic ID

98039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella

Family

NAC

Protein Properties

Length: 500aa MW: 57680.3 Da PI: 5.0993

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp6g26970	genome	thellungiella	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	178	2.5e-55	6	133	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkge 98 lppGfrFhPtdeel+++yLk+k++g+++el e+i+evd+yk+ePwdLp k + ++++ewyfFs+rd+ky++g+r+nratk gyWkatgkd++v +++ Tp6g26970 6 LPPGFRFHPTDEELITYYLKRKINGREIEL-EIIPEVDLYKCEPWDLPgKsLLPSKDQEWYFFSPRDRKYPNGSRTNRATKGGYWKATGKDRRVSW-RDR 103 79**************************.99***********6345667999*********************************9.899 PP NAM 99 lvglkktLvfykgrapkgektdWvmheyrl 128 ++g+kktLv+y+grap+g++t Wvmheyrl Tp6g26970 104 TIGTKKTLVYYRGRAPHGVRTGWVMHEYRL 133 9*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	3.92E-63	4	157	IPR003441	NAC domain
PROSITE profile	PS51005	61.295	6	157	IPR003441	NAC domain
Pfam	PF02365	2.3E-29	7	133	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0090602	Biological Process	sieve element enucleation
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 500 aa Download sequence Send to blast
MAPVSLPPGF RFHPTDEELI TYYLKRKING REIELEIIPE VDLYKCEPWD LPGKSLLPSK 60 DQEWYFFSPR DRKYPNGSRT NRATKGGYWK ATGKDRRVSW RDRTIGTKKT LVYYRGRAPH 120 GVRTGWVMHE YRLDETECEP TAFGMQDAYA LCRVFKKIII EAKPRSDQHQ QHHLPYVHTS 180 SNISGNSSFD VCSDLEISSS THQALPYNNA TETQPRFGNT NAIVDHDDWS QYLSQDMPTG 240 FLNYGSHYGP YLTQSKVNDE TECGMLQHQM SLPPLRVENS AVQTSDFSNG LNQNSVQCGF 300 NDFTFVASNS NQLYNSNVDD HSIDIGKLDE RWLNAGNSTW MKMSNENLKQ SFIEEQETLP 360 SFEEDDQDLE FYGGSRINTI NNIEIDEFFS FENQVEDNDK SNITLNSSGS EMIEEEISVN 420 HKMLICTRQT TEVLYYQVVP SQILKIHINP IEGIFEERTM LVEEEGKNSW FQKAENVAKM 480 KLKQIGVVAK HYYKCLTIIF

Sequence ? help Back to Top

Protein Sequence Length: 500 aa Download sequence Send to blast

MAPVSLPPGF RFHPTDEELI TYYLKRKING REIELEIIPE VDLYKCEPWD LPGKSLLPSK  60
DQEWYFFSPR DRKYPNGSRT NRATKGGYWK ATGKDRRVSW RDRTIGTKKT LVYYRGRAPH  120
GVRTGWVMHE YRLDETECEP TAFGMQDAYA LCRVFKKIII EAKPRSDQHQ QHHLPYVHTS  180
SNISGNSSFD VCSDLEISSS THQALPYNNA TETQPRFGNT NAIVDHDDWS QYLSQDMPTG  240
FLNYGSHYGP YLTQSKVNDE TECGMLQHQM SLPPLRVENS AVQTSDFSNG LNQNSVQCGF  300
NDFTFVASNS NQLYNSNVDD HSIDIGKLDE RWLNAGNSTW MKMSNENLKQ SFIEEQETLP  360
SFEEDDQDLE FYGGSRINTI NNIEIDEFFS FENQVEDNDK SNITLNSSGS EMIEEEISVN  420
HKMLICTRQT TEVLYYQVVP SQILKIHINP IEGIFEERTM LVEEEGKNSW FQKAENVAKM  480
KLKQIGVVAK HYYKCLTIIF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	2e-54	2	157	11	168	Stress-induced transcription factor NAC1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor directing sieve element enucleation and cytosol degradation. Not required for formation of lytic vacuoles. Regulates, with NAC045, the transcription of NEN1, NEN2, NEN3, NEN4, RTM1, RTM2, UBP16, PLDZETA, ABCB10 and At1g26450. {ECO:0000269\|PubMed:25081480}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp6g26970

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006400258.1	0.0	NAC domain-containing protein 86
Swissprot	Q9FFI5	0.0	NAC86_ARATH; NAC domain-containing protein 86
TrEMBL	V4N7S3	0.0	V4N7S3_EUTSA; Uncharacterized protein
STRING	XP_006400258.1	0.0	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4411	18	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G17260.1	0.0	NAC domain containing protein 86

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]