PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp6g26220

Organism

Thellungiella parvula

Taxonomic ID

98039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella

Family

Protein Properties

Length: 306aa MW: 34916.1 Da PI: 9.6285

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp6g26220	genome	thellungiella	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	54	3e-17	20	110	2	96
EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS B3 2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 fkvl ++d +++ + +p +f+++++ + s++++l+ ++g sW +kl +++++ y+ ++GW +F ++n L +++ ++F+++g+++f v + Tp6g26220 20 FKVLRKEDLSSETMRGIPHDFMKSISAE-DFSFKMVLKLPWGSSWPIKL--SRNPRFyYMEKNGWDQFLSDNALGDNELLTFTHKGNMCF--SVNI 110 899*****************999544.699*************..99555669********************999..4444 PP
2	B3	44.6	2.7e-14	225	300	16	96
EE--HHH.HTT---..--SEEEEEETTS.-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS B3 16 lvlpkkfaeehggkkeesktltledesg.rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 l +pkkfae h+ k e ++ ++ +++g +sWevk+ ++ + ++ GW + vk+ gLk gD+++F l++ e+v++v Tp6g26220 225 LGVPKKFAEMHMPK--EATMFKIHHSKGkKSWEVKY--VVSDIQSRFSPGWVRLVKDLGLKFGDVCTFVLIKP--NEMVLTV 300 569******866..44578888877779**..666666679********************9973..3334444 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	9.0E-18	14	114	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	1.1E-18	15	118	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	7.89E-16	17	111	No hit	No description
PROSITE profile	PS50863	12.449	19	114	IPR003340	B3 DNA binding domain
Pfam	PF02362	2.3E-15	19	110	IPR003340	B3 DNA binding domain
SMART	SM01019	7.0E-21	19	114	IPR003340	B3 DNA binding domain
Gene3D	G3DSA:2.40.330.10	2.0E-17	210	302	IPR015300	DNA-binding pseudobarrel domain
PROSITE profile	PS50863	11.66	210	304	IPR003340	B3 DNA binding domain
CDD	cd10017	2.80E-13	211	301	No hit	No description
SuperFamily	SSF101936	4.51E-18	211	301	IPR015300	DNA-binding pseudobarrel domain
SMART	SM01019	5.0E-17	213	304	IPR003340	B3 DNA binding domain
Pfam	PF02362	5.0E-11	225	297	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 306 aa Download sequence Send to blast
MAKNSCFGKI MEEGDKPGYF KVLRKEDLSS ETMRGIPHDF MKSISAEDFS FKMVLKLPWG 60 SSWPIKLSRN PRFYYMEKNG WDQFLSDNAL GDNELLTFTH KGNMCFSVNI YQIDCSEMLR 120 PKNSATIASS SRNKREHRNN VYKDVKEEER ESLSASSYPG SETAESTVGG RLKQKREFNL 180 GKKKLEEAEK SKKKMDTDCD DSEAGTSSLA PEFTLTIKKS YILFLGVPKK FAEMHMPKEA 240 TMFKIHHSKG KKSWEVKYVV SDIQSRFSPG WVRLVKDLGL KFGDVCTFVL IKPNEMVLTV 300 SKNGTP

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00517	DAP	Transfer from AT5G18090	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp6g26220

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013680975.1	1e-162	B3 domain-containing protein At5g18000-like isoform X2
Swissprot	Q9FK61	1e-131	Y5809_ARATH; B3 domain-containing protein At5g18090
TrEMBL	A0A078HJ49	1e-160	A0A078HJ49_BRANA; BnaA10g16730D protein
STRING	Bra002132.1-P	1e-158	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM565	21	135

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G18090.1	1e-133	B3 family protein

Publications ? help Back to Top
Mantegazza O, et al. Analysis of the arabidopsis REM gene family predicts functions during flower development. Ann. Bot., 2014. 114(7): p. 1507-15 [PMID:25002525]