PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Tp6g23460 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
|
||||||||
Family | NAC | ||||||||
Protein Properties | Length: 162aa MW: 19370 Da PI: 5.35 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 60.7 | 4.8e-19 | 10 | 136 | 8 | 128 |
NAM 8 hPtdeelvveyLkkkvegkkleleevikev..diykvePwdLpk..kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgelvgl 102 h +dee++ +yL++kv g++ + ++i e+ ++y++ePw Lp+ + + +ew+fF kr++ky +++ + +g+W a +++ s +ge++g Tp6g23460 10 HISDEEIIEKYLRPKVFGEPSGIPSFIVELgeELYTIEPWLLPHvtDLILNPREWFFFGKRKRKYL---QSEGVHGEGVWVAVECCHALWSDeTGEEIGR 106 568*****************8887788887668**********5233334788************7...56667889******99999988768899*** PP NAM 103 kktLvfy....kgrapkgektdWvmheyrl 128 + +y + ++++ e t+W+m eyrl Tp6g23460 107 TSRFRYYyrnkDDETSDMEMTNWFMREYRL 136 *****997654345566679********97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 28.815 | 3 | 157 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.7E-12 | 8 | 136 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 7.19E-27 | 8 | 156 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 162 aa Download sequence Send to blast |
MVFSPELKCH ISDEEIIEKY LRPKVFGEPS GIPSFIVELG EELYTIEPWL LPHVTDLILN 60 PREWFFFGKR KRKYLQSEGV HGEGVWVAVE CCHALWSDET GEEIGRTSRF RYYYRNKDDE 120 TSDMEMTNWF MREYRLFNTS TRTFYPGRQV LCKITCNDRN FV |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Tp6g23460 |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | NP_001077770.1 | 5e-63 | pentatricopeptide (PPR) repeat-containing protein | ||||
Refseq | NP_564823.1 | 7e-68 | NAC domain containing protein 27 | ||||
TrEMBL | A0A087HH58 | 6e-65 | A0A087HH58_ARAAL; Uncharacterized protein | ||||
TrEMBL | A0A178WJS8 | 2e-66 | A0A178WJS8_ARATH; NAC027 | ||||
TrEMBL | Q9SH61 | 2e-66 | Q9SH61_ARATH; At1g64105 | ||||
STRING | AT1G64105.1 | 3e-67 | (Arabidopsis thaliana) | ||||
STRING | A0A087HH58 | 1e-65 | (Arabis alpina) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM15427 | 11 | 17 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G64105.1 | 3e-71 | NAC domain containing protein 27 |