PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp6g22950
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family NAC
Protein Properties Length: 340aa    MW: 38259.5 Da    PI: 5.0991
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp6g22950genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM158.23.3e-49171422128
        NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelv 100
                 pGf+F+Ptd el+++yLk+k++g + ++ evi+++diy++ePwdLp k++ ++++ew+fF+ r kky++g++++ratk gyWkatgk+++v+s ++e++
  Tp6g22950  17 FPGFKFSPTDVELISYYLKRKLDGLERSV-EVIPDADIYNFEPWDLPdKSIVKSDTEWFFFCARGKKYPHGSQNRRATKMGYWKATGKERDVKS-SSEVI 114
                69************************999.99***************778888999**************************************.999** PP

        NAM 101 glkktLvfykgrapkgektdWvmheyrl 128
                g+k+tLvf+ grapkge+t+W+mhey +
  Tp6g22950 115 GTKRTLVFHIGRAPKGERTEWIMHEYCM 142
                **************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019418.37E-5414158IPR003441NAC domain
PROSITE profilePS5100551.75316159IPR003441NAC domain
PfamPF023658.7E-2518141IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009626Biological Processplant-type hypersensitive response
GO:0009910Biological Processnegative regulation of flower development
GO:0034976Biological Processresponse to endoplasmic reticulum stress
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005783Cellular Componentendoplasmic reticulum
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    Send to blast
MEAESMGASK DTALTVFPGF KFSPTDVELI SYYLKRKLDG LERSVEVIPD ADIYNFEPWD  60
LPDKSIVKSD TEWFFFCARG KKYPHGSQNR RATKMGYWKA TGKERDVKSS SEVIGTKRTL  120
VFHIGRAPKG ERTEWIMHEY CMKGASLDDA LVVCRLKRNK EFHSCTSQKA PAPNLAAEEH  180
MILQNGADSS RSPSDWENMV DFYLAGESGE KLLTDMAETA ENLKVQTEED FFADILRDEI  240
INLDEAVMTG NTTNEVPTLE SASMAVRVLP LPNMIDKQMS SLLEERPSQE KKGKKGKESS  300
GTESLSSCFV GLYSIKSVNR ARWDVIICAV ALIVLLFYLE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A5e-421216013166NO APICAL MERISTEM PROTEIN
1ut4_B5e-421216013166NO APICAL MERISTEM PROTEIN
1ut7_A5e-421216013166NO APICAL MERISTEM PROTEIN
1ut7_B5e-421216013166NO APICAL MERISTEM PROTEIN
3swm_A6e-421216016169NAC domain-containing protein 19
3swm_B6e-421216016169NAC domain-containing protein 19
3swm_C6e-421216016169NAC domain-containing protein 19
3swm_D6e-421216016169NAC domain-containing protein 19
3swp_A6e-421216016169NAC domain-containing protein 19
3swp_B6e-421216016169NAC domain-containing protein 19
3swp_C6e-421216016169NAC domain-containing protein 19
3swp_D6e-421216016169NAC domain-containing protein 19
4dul_A5e-421216013166NAC domain-containing protein 19
4dul_B5e-421216013166NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in plant cell division. {ECO:0000269|PubMed:16803883}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp6g22950
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006400734.10.0NAC domain-containing protein 89
SwissprotQ94F580.0NAC89_ARATH; NAC domain-containing protein 89
TrEMBLV4LID40.0V4LID4_EUTSA; Uncharacterized protein
STRINGXP_006400734.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM43092356
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22290.10.0NAC domain containing protein 89
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]