PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp6g22510 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
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Family | C2H2 | ||||||||
Protein Properties | Length: 376aa MW: 42793.6 Da PI: 8.2204 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 23.2 | 1.8e-07 | 217 | 239 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C++Cgk F+r nL+ H+r H Tp6g22510 217 HYCQICGKGFKRDANLRMHMRAH 239 68*******************99 PP | |||||||
2 | zf-C2H2 | 14.1 | 0.00014 | 338 | 353 | 6 | 21 |
TTEEESSHHHHHHHHH CS zf-C2H2 6 CgksFsrksnLkrHir 21 Cg++Fsrk+ L++Hi+ Tp6g22510 338 CGTRFSRKDKLMSHIS 353 **************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 3.99E-6 | 215 | 241 | No hit | No description |
PROSITE profile | PS50157 | 12.632 | 217 | 244 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.0028 | 217 | 239 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 3.7E-6 | 217 | 244 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
Pfam | PF12874 | 0.0025 | 218 | 237 | No hit | No description |
PROSITE pattern | PS00028 | 0 | 219 | 239 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 160 | 268 | 301 | IPR015880 | Zinc finger, C2H2-like |
SMART | SM00355 | 55 | 306 | 328 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 376 aa Download sequence Send to blast |
MNQGEHIMNN GEGLMSCFSE TTTTSSNPVY YNPMMAAMKS SEDDDIISLS LLLNLSTIQD 60 KVHQIQSLVS FFMISTDNNN QSAESRSSTL AVANIGGLVQ EIITAASSMM FTCQQLHISS 120 NNNSNIVNDQ TADATVMEFS PQEINSSHDF MRESSTNVLG VQERGHISFL DQTAQNLEWY 180 GTQTINPKKD HPLCKSRFEN YGIVELGVAD LLAKYTHYCQ ICGKGFKRDA NLRMHMRAHG 240 DEYKTREALI NPTSHEKKIE YSLKRYYYSC PQQGCRWNQR HEKFQPLKSV ICAKNHYKRS 300 HCPKLYMCRR CNVKHFSVLS DLRTHEKHCG YIKWVCSCGT RFSRKDKLMS HISLFLGHSP 360 AHGPPQQQPP MTLITP |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. Together with STOP1, plays a critical role in tolerance to major stress factors in acid soils such as proton H(+) and aluminum ion Al(3+). Required for the expression of genes in response to acidic stress (e.g. ALMT1 and MATE), and Al-activated citrate exudation. {ECO:0000269|PubMed:23935008}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00522 | DAP | Transfer from AT5G22890 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp6g22510 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | - | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013665869.1 | 0.0 | protein SENSITIVE TO PROTON RHIZOTOXICITY 2 | ||||
Swissprot | Q0WT24 | 0.0 | STOP2_ARATH; Protein SENSITIVE TO PROTON RHIZOTOXICITY 2 | ||||
TrEMBL | A0A078CCG3 | 0.0 | A0A078CCG3_BRANA; BnaA04g16510D protein | ||||
STRING | Bra002438.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5752 | 25 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G22890.1 | 1e-180 | C2H2 family protein |