PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp6g22060
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family C2H2
Protein Properties Length: 465aa    MW: 52020.4 Da    PI: 9.6374
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp6g22060genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.45.5e-056890123
               EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
               + C++C+k F r  nL+ H r H
  Tp6g22060 68 FFCEICNKGFQREQNLQLHKRGH 90
               67******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.6E-56790IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576676.31E-86790No hitNo description
SMARTSM003550.0096890IPR015880Zinc finger, C2H2-like
PfamPF121715.2E-66890IPR022755Zinc finger, double-stranded RNA binding
PROSITE profilePS5015710.8036890IPR007087Zinc finger, C2H2
PROSITE patternPS0002807090IPR007087Zinc finger, C2H2
SMARTSM0035589110140IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.605.9E-4133166IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576676.31E-8140165No hitNo description
SMARTSM00355220145165IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 465 aa     Download sequence    Send to blast
MMIPHNHDRL SFSSPVHDQE HITPNPNPNS KPASTNTFKR KRNLPGNPDP DAEVVALSPK  60
SLMATNRFFC EICNKGFQRE QNLQLHKRGH NLPWKLKQRK NKDLVKKRVY ICPEKSCVHN  120
DPSRALGDLT GIKKHFSRKH GEKKWKCDKC SKKYAVISDW KAHSKICGSR EYRCDCGTLF  180
SRKDSFITHR AFCDALADET AKFVSSAPSP LGANSAISIA ATTSNPILIQ SQLDHSLTRT  240
DSLSVNRNDT TLLGYNFTDS GQISLQTNVF ALPSPQSPRG TSDSVHNLRK LQEDGSHHWL  300
LNEYMNNNKN ILQKGIFNNQ EDEIKKRYIY DGSNPTGQNI ASMFLKNQEG NLASLSATKL  360
LQKVSQLGSS SSSNASPMFG VTTSSIFNNA MPNSICLKQK NKEQELTRDF LGVGSGDDQK  420
RLHHHHFSSR VPLTVNHDIS KLDPTTVGGE ATVDMASDSE NTHYY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C9e-33141205367Zinc finger protein JACKDAW
5b3h_F9e-33141205367Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000305}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp6g22060
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024012450.10.0protein indeterminate-domain 13
SwissprotF4JYZ80.0IDD13_ARATH; Protein indeterminate-domain 13
TrEMBLA0A1J3I0J10.0A0A1J3I0J1_NOCCA; Protein indeterminate-domain 13
STRINGXP_006400845.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15528306
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60470.10.0C2H2 family protein
Publications ? help Back to Top
  1. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]