PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp6g20600 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
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Family | MYB_related | ||||||||
Protein Properties | Length: 250aa MW: 27397.7 Da PI: 8.9607 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 46.2 | 1e-14 | 146 | 190 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE++l++ + k++G+g+W+ I+r + +Rt+ q+ s+ qky Tp6g20600 146 PWTEEEHKLFLMGLKKYGKGDWRNISRNFVITRTPTQVASHAQKY 190 8*****************************99************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51293 | 7.667 | 32 | 87 | IPR017884 | SANT domain |
SMART | SM00717 | 1.3E-6 | 33 | 85 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.02E-6 | 36 | 82 | No hit | No description |
SuperFamily | SSF46689 | 5.64E-10 | 36 | 89 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 20.491 | 139 | 195 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.23E-17 | 141 | 195 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.4E-17 | 142 | 194 | IPR006447 | Myb domain, plants |
Gene3D | G3DSA:1.10.10.60 | 1.3E-12 | 143 | 189 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.2E-13 | 143 | 193 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.0E-13 | 146 | 190 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.93E-11 | 146 | 191 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 250 aa Download sequence Send to blast |
MEILRPTTSH VSRGNWLMEE TKSNVAVAAS CEVAATWTAA ENKAFENALA VYDDNTPDRW 60 QKVAAVIPGK TVSDVIRQYN DLEADVSSIE AGLIPVPGYI TSPFTLDWAG GGGGDGRNGF 120 KPGHIVGNKR SPAGRSPELE RKKGVPWTEE EHKLFLMGLK KYGKGDWRNI SRNFVITRTP 180 TQVASHAQKY FIRQHSGGKD KRRASIHDIT TVNLEDEASL ETNKSSIVGR EQQHNVSAIA 240 SGESISNLKV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 5e-17 | 37 | 102 | 11 | 76 | RADIALIS |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00568 | DAP | Transfer from AT5G58900 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp6g20600 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | - | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK118891 | 0.0 | AK118891.1 Arabidopsis thaliana At5g58900 mRNA for putative I-box binding factor, complete cds, clone: RAFL21-22-M07. | |||
GenBank | AY519533 | 0.0 | AY519533.1 Arabidopsis thaliana MYB transcription factor (At5g58900) mRNA, complete cds. | |||
GenBank | BT005473 | 0.0 | BT005473.1 Arabidopsis thaliana clone U51211 putative I-box binding factor (At5g58900) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006401027.1 | 1e-154 | transcription factor DIVARICATA | ||||
Swissprot | Q8S9H7 | 1e-101 | DIV_ANTMA; Transcription factor DIVARICATA | ||||
TrEMBL | V4KWX6 | 1e-153 | V4KWX6_EUTSA; Uncharacterized protein | ||||
STRING | XP_006401027.1 | 1e-154 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1228 | 27 | 100 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G58900.1 | 1e-140 | Homeodomain-like transcriptional regulator |
Publications ? help Back to Top | |||
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