PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp6g20320
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family C3H
Protein Properties Length: 619aa    MW: 68089.3 Da    PI: 5.5515
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp6g20320genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH26.11.5e-08259279526
                --SGGGGTS--TTTTT-SS-SS CS
    zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                +C+ f++ G C++Gd+C +aHg
  Tp6g20320 259 PCPEFRK-GSCSRGDSCEYAHG 279
                8******.*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF127968.9E-953126IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484031.87E-1354165IPR020683Ankyrin repeat-containing domain
SMARTSM002480.00445787IPR002110Ankyrin repeat
PROSITE profilePS5029712.80657166IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.203.8E-1357138IPR020683Ankyrin repeat-containing domain
CDDcd002044.22E-1259135No hitNo description
SMARTSM002480.08992124IPR002110Ankyrin repeat
PROSITE profilePS500888.92392127IPR002110Ankyrin repeat
SMARTSM003562.5E-5254280IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.4E-4258281IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.619259281IPR000571Zinc finger, CCCH-type
PfamPF006425.7E-6259279IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.9E-5287317IPR000571Zinc finger, CCCH-type
SMARTSM0035613289312IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.653289313IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 619 aa     Download sequence    Send to blast
MGDDELSHLK SSLLLESSAC NDLSGFKSLI EEEGLESIDR SGLWYGRRLG SKKMGLEERT  60
PLMIAALFGS KEIVDYIIST GLVDVNRPCG SDGATALHCA VYGLSANSLE VVTLLRNGSA  120
DPDSRDACGN KPVDVIFPCL SPVFSARKKV LERLLKGSND LNEVDVQEEK EEEDRDVEVS  180
VSVSVSPPRG SERKEYPVDP TLPDIKNGIY GTDEFRMYAF KIKPCSRAYS HDWTECPFVH  240
PGENARRRDP RKYHYSCVPC PEFRKGSCSR GDSCEYAHGI FECWLHPAQY RTRLCKDETN  300
CPRRVCFFAH KPEELRPLYP STGSGVPSPR SSFSSCNSSA FDMGPISPLP PLSPNGISTT  360
PPLSPNGVSS PIGGGKPWMN WPNITPPALQ LPGSRLKSAL NAREIDFSEE IRSLSSPNRW  420
NNNTPVSAAS SPFSGKGMNR LAGGGMSLVN SLSDMFGTED NTPGLQIRRS FINPQLHSSS  480
LSSSPVGANS QFSMDSPTVL ASREAAFANQ RSQSFIERSN GLNHHPAIST LTTTCLNDWG  540
SLDGKLDWSV HGDELQKLRK STSFRLRADA MESRVPMEGS EPEEPDVSWV EPLVKEPQET  600
RLAPVWMEHS YMETEQTVA
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00566DAPTransfer from AT5G58620Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp6g20320
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010483463.10.0PREDICTED: zinc finger CCCH domain-containing protein 66
SwissprotQ9LUZ40.0C3H66_ARATH; Zinc finger CCCH domain-containing protein 66
TrEMBLD7MQF90.0D7MQF9_ARALL; Zinc finger (CCCH-type) family protein
STRINGBostr.26833s0388.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM87726107
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58620.10.0C3H family protein