PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp6g20000
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family MYB_related
Protein Properties Length: 446aa    MW: 50582.6 Da    PI: 6.7341
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp6g20000genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding36.61e-11397444247
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                      + WT+eE e l ++vk++G+  Wk I +  +     Rt+ ++k++w+++
        Tp6g20000 397 KFWTPEEVEALREGVKEYGKS-WKDIKNANPavfRERTEVDLKDKWRNL 444
                      67*****************88.************99***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.569391446IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.9E-13393446IPR009057Homeodomain-like
SuperFamilySSF466891.72E-13393445IPR009057Homeodomain-like
SMARTSM007172.3E-5395446IPR001005SANT/Myb domain
CDDcd116601.16E-16397446No hitNo description
PfamPF002498.1E-9399444IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009901Biological Processanther dehiscence
GO:0010152Biological Processpollen maturation
GO:0043067Biological Processregulation of programmed cell death
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 446 aa     Download sequence    Send to blast
MEVIDNWVAE FFIRRQRNPR VSPTNLLSAL TFGDSPDCLK LKISSVLRDI SNSVIRGTID  60
EGTLDLLEIL EKLLLQQRSL LMESHKSAYC WMAAECTLRF MWPLSASDGL FADALERIWT  120
KRIGILKESG SDLVTHDLLK WETDMKKALE DPELYQRIRE TNIRYRAISS LTQLLKEQWA  180
LLGSSSLESV AQRRFLKRKA ENNAEGDSVH NRGDPNANDE STRRLDSDAV DNANERRGTG  240
EGQDGNGNNR DVKGVGCLEN DRIDKVNEQH AADEERTMDA QEQEHEPSLD KGDKAAAREL  300
KDYLLEIQGK IHPSSRQVQE PNNAIDHSVD VTPQPARVNR TGTSGQDHNE ARDNVNAKSS  360
SSQGTWSGRV RPRLSTPVPL NVSPLKKANS PVRRPKKFWT PEEVEALREG VKEYGKSWKD  420
IKNANPAVFR ERTEVDLKDK WRNLVR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1192198RRFLKRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp6g20000
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006401098.20.0uncharacterized protein LOC18018067 isoform X2
TrEMBLV4N9V10.0V4N9V1_EUTSA; Uncharacterized protein
STRINGXP_006401097.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM77201731
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58340.20.0MYB_related family protein