PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp6g16030 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
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Family | NAC | ||||||||
Protein Properties | Length: 366aa MW: 40721.5 Da PI: 8.434 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 178.4 | 1.9e-55 | 17 | 145 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgel 99 lppGfrFhPtdeel+++yL +kv + ++ ++i+evd++k+ePw+Lp k+k +ekewyfFs rd+ky+tg r+nrat++gyWkatgkd+e++s+ + +l Tp6g16030 17 LPPGFRFHPTDEELITHYLLRKVLDGCFSS-RAIAEVDLNKCEPWQLPGKAKMGEKEWYFFSLRDRKYPTGLRTNRATEAGYWKATGKDREIYSSkTCAL 115 79*************************999.89***************99999****************************************9745567 PP NAM 100 vglkktLvfykgrapkgektdWvmheyrle 129 vg+kktLvfykgrapkgek++Wvmheyrle Tp6g16030 116 VGMKKTLVFYKGRAPKGEKSNWVMHEYRLE 145 ****************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.22E-63 | 4 | 169 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 59.819 | 17 | 169 | IPR003441 | NAC domain |
Pfam | PF02365 | 4.9E-29 | 18 | 144 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010072 | Biological Process | primary shoot apical meristem specification | ||||
GO:0010160 | Biological Process | formation of organ boundary | ||||
GO:0010223 | Biological Process | secondary shoot formation | ||||
GO:0048366 | Biological Process | leaf development | ||||
GO:0048504 | Biological Process | regulation of timing of organ formation | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 366 aa Download sequence Send to blast |
MDIPYYHYDH GGDSQYLPPG FRFHPTDEEL ITHYLLRKVL DGCFSSRAIA EVDLNKCEPW 60 QLPGKAKMGE KEWYFFSLRD RKYPTGLRTN RATEAGYWKA TGKDREIYSS KTCALVGMKK 120 TLVFYKGRAP KGEKSNWVMH EYRLEGKFSY HFISRSSKDE WVISRVFKKT GLVNTGVSGG 180 ASASVSSCTD AKKTKIPSNI STNYREQPGS PSSVSLPPLL DPTTTLGYTD SSCSYDSRST 240 NTTVTAAAIT EHVSCFSTAT TTTALGLDVN VDSFNHLLPP APPGFDPFPR FVSRNVSTLS 300 NFRSFQENFN HFQYFGSSSA STMTPSVNLP SSHGGTGMNY WLQTTAEENE TKAGLLNGGL 360 DCVWNY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 1e-52 | 17 | 169 | 17 | 165 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 1e-52 | 17 | 169 | 17 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 1e-52 | 17 | 169 | 17 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 1e-52 | 17 | 169 | 17 | 165 | NO APICAL MERISTEM PROTEIN |
3swm_A | 1e-52 | 17 | 169 | 20 | 168 | NAC domain-containing protein 19 |
3swm_B | 1e-52 | 17 | 169 | 20 | 168 | NAC domain-containing protein 19 |
3swm_C | 1e-52 | 17 | 169 | 20 | 168 | NAC domain-containing protein 19 |
3swm_D | 1e-52 | 17 | 169 | 20 | 168 | NAC domain-containing protein 19 |
3swp_A | 1e-52 | 17 | 169 | 20 | 168 | NAC domain-containing protein 19 |
3swp_B | 1e-52 | 17 | 169 | 20 | 168 | NAC domain-containing protein 19 |
3swp_C | 1e-52 | 17 | 169 | 20 | 168 | NAC domain-containing protein 19 |
3swp_D | 1e-52 | 17 | 169 | 20 | 168 | NAC domain-containing protein 19 |
4dul_A | 1e-52 | 17 | 169 | 17 | 165 | NAC domain-containing protein 19 |
4dul_B | 1e-52 | 17 | 169 | 17 | 165 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator of STM and KNAT6. Involved in molecular mechanisms regulating shoot apical meristem (SAM) formation during embryogenesis and organ separation. Required for the fusion of septa of gynoecia along the length of the ovaries. Activates the shoot formation in callus in a STM-dependent manner. Controls leaf margin development and required for leaf serration. Involved in axillary meristem initiation and separation of the meristem from the main stem. Regulates the phyllotaxy throughout the plant development. Seems to act as an inhibitor of cell division. {ECO:0000269|PubMed:10079219, ECO:0000269|PubMed:10750709, ECO:0000269|PubMed:12163400, ECO:0000269|PubMed:12492830, ECO:0000269|PubMed:12610213, ECO:0000269|PubMed:15202996, ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:15500463, ECO:0000269|PubMed:15723790, ECO:0000269|PubMed:16798887, ECO:0000269|PubMed:17098808, ECO:0000269|PubMed:17122068, ECO:0000269|PubMed:17251269, ECO:0000269|PubMed:17287247, ECO:0000269|PubMed:9212461}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00562 | DAP | Transfer from AT5G53950 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp6g16030 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By BRM and SYD, at the chromatin level, and conferring a very specific spatial expression pattern. Precise spatial regulation by post-transcriptional repression directed by the microRNA miR164. {ECO:0000269|PubMed:15202996, ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:15723790, ECO:0000269|PubMed:16854978, ECO:0000269|PubMed:17251269, ECO:0000269|PubMed:17287247}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | - | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FJ435162 | 0.0 | FJ435162.1 Cardamine hirsuta CUP-SHAPED COTYLEDON2 (CUC2) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009119934.1 | 0.0 | PREDICTED: protein CUP-SHAPED COTYLEDON 2-like | ||||
Swissprot | O04017 | 0.0 | NAC98_ARATH; Protein CUP-SHAPED COTYLEDON 2 | ||||
TrEMBL | A0A397XJ93 | 0.0 | A0A397XJ93_BRACM; Uncharacterized protein | ||||
STRING | Bo9g113820.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6615 | 27 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G53950.1 | 0.0 | NAC family protein |