PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp6g14830 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
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Family | MYB_related | ||||||||
Protein Properties | Length: 256aa MW: 28206.7 Da PI: 9.6788 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 38.9 | 2e-12 | 53 | 97 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r +WT+ E++++++a +++ + Wk+I + +g +t q++s+ qky Tp6g14830 53 RESWTEPEHDKFLEALQLFDRD-WKKIEAFIG-SKTVIQIRSHAQKY 97 789*****************77.*********.*************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 3.89E-16 | 47 | 103 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 13.758 | 48 | 102 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.1E-6 | 51 | 103 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.6E-18 | 51 | 100 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 9.6E-10 | 52 | 100 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.4E-10 | 53 | 97 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 7.90E-8 | 55 | 98 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0046686 | Biological Process | response to cadmium ion | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 256 aa Download sequence Send to blast |
MTVPAIGTFT AAVSSSPTTS STAVAVADAT ATISSSEDLS KKIRKPYTIT KSRESWTEPE 60 HDKFLEALQL FDRDWKKIEA FIGSKTVIQI RSHAQKYFLK VQKSGTGEHL PPPRPKRKAS 120 HPYPQKAHKN AGAGANNNCS SSSENTPRPR SNKDTNEQGN LGHSLRVLPD FAQVYSFIGS 180 VFDPYASNHL QKLKKMDPID VETVLLLMRN LSINLSSPDF EDHRRLLSSY DIGSETATDH 240 GGVSKTLNKE PPEIST |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00560 | DAP | Transfer from AT5G52660 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp6g14830 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY550303 | 1e-151 | AY550303.1 Arabidopsis thaliana MYB transcription factor (At5g52660) mRNA, complete cds. | |||
GenBank | BT002002 | 1e-151 | BT002002.1 Arabidopsis thaliana putative protein (At5g52660) mRNA, complete cds. | |||
GenBank | BT025882 | 1e-151 | BT025882.1 Arabidopsis thaliana At5g52660 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024012565.1 | 1e-152 | protein REVEILLE 6 isoform X2 | ||||
Swissprot | Q8H0W3 | 1e-133 | RVE6_ARATH; Protein REVEILLE 6 | ||||
TrEMBL | V4LLA0 | 1e-151 | V4LLA0_EUTSA; Uncharacterized protein | ||||
STRING | XP_006401794.1 | 1e-151 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1290 | 28 | 93 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G01520.1 | 8e-86 | MYB_related family protein |
Publications ? help Back to Top | |||
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