PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp6g14230
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family C3H
Protein Properties Length: 435aa    MW: 47359.5 Da    PI: 7.5768
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp6g14230genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.81.4e-06111132426
                ---SGGGGTS--TTTTT-SS-SS CS
    zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                + C+f+   G C yGd+C++ H+
  Tp6g14230 111 KVCNFWVD-GKCTYGDKCRYLHC 132
                68**9*99.*************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010310.852854IPR000571Zinc finger, CCCH-type
SMARTSM003568.5E-42853IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.202107134IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.66E-6107131IPR000571Zinc finger, CCCH-type
SMARTSM003562.8E-4109133IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.7E-5111130IPR000571Zinc finger, CCCH-type
PfamPF006422.0E-4111132IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:2.130.10.108.9E-46131426IPR015943WD40/YVTN repeat-like-containing domain
SuperFamilySSF509784.33E-46138428IPR017986WD40-repeat-containing domain
SMARTSM003201.7E-6138177IPR001680WD40 repeat
PfamPF004006.7E-5141177IPR001680WD40 repeat
PROSITE profilePS5029421.041145347IPR017986WD40-repeat-containing domain
PROSITE profilePS5008214.719145186IPR001680WD40 repeat
PRINTSPR003201.3E-6164178IPR020472G-protein beta WD-40 repeat
PROSITE patternPS006780164178IPR019775WD40 repeat, conserved site
SMARTSM003205.9217254IPR001680WD40 repeat
SMARTSM003200.025261298IPR001680WD40 repeat
PfamPF004000.079265298IPR001680WD40 repeat
PROSITE profilePS5008211.511268307IPR001680WD40 repeat
PRINTSPR003201.3E-6285299IPR020472G-protein beta WD-40 repeat
SMARTSM003201.9E-4301338IPR001680WD40 repeat
PfamPF004000.0046303337IPR001680WD40 repeat
PRINTSPR003201.3E-6325339IPR020472G-protein beta WD-40 repeat
SMARTSM003206.2342385IPR001680WD40 repeat
SMARTSM003204.4388425IPR001680WD40 repeat
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 435 aa     Download sequence    Send to blast
MDFDLKERNK RVFNRLGGGS TRPAAATDSR QQVCFHWRAG RCNRNPCHFL HRELPGPVPS  60
QSPGPGHTNK RIADESGFAG PSHRRGPGFN GNSSNSWGRF GGNRTVTKTE KVCNFWVDGK  120
CTYGDKCRYL HCWSKGDSFS LLTQLDGHEK LVSGIALPPG SDKLYTGSKD ETIRVWDCAS  180
GQCTNVLNLG AEVGCVISEG PWLLVGMPNL VKAWNIETNA DQSLSGPVGQ VYSLVVGTDL  240
LFAGTQDGSI LAWRYNAATN CFEPAASLTG HTLAVVTLYV GANRLYSGSM DKSIKVWSLD  300
NLQCIQTLTD HTSVVMSLIC WDQFLLSCSL DNTVKIWAAI EGGNLEVTYT HKEEHGVLAL  360
CGVHDAEAKP VLLCSCNDST LRLYDLPSFT ERGKIFAKQE IRSIQIGPGG IFFTGDGTGQ  420
VKVWQWSSAP TAAMS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6g6m_A6e-211184248323Tako8
6g6n_A6e-211184248323Tako8
6g6n_B6e-211184248323Tako8
6g6n_C6e-211184248323Tako8
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp6g14230
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006401881.10.0zinc finger CCCH domain-containing protein 63
SwissprotQ9FNZ10.0C3H63_ARATH; Zinc finger CCCH domain-containing protein 63
TrEMBLV4LHV70.0V4LHV7_EUTSA; Uncharacterized protein
STRINGXP_006401881.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM18392869
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51980.10.0C3H family protein