PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp6g14160
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family TCP
Protein Properties Length: 312aa    MW: 33625.5 Da    PI: 5.412
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp6g14160genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP117.22.1e-3672148277
        TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaes 77 
                ++ k++++++hTkv+gR+RR+R++a caar+F+L++eLG+++d++ti WLl+ ++pai+e+tgt++++a ++  +++
  Tp6g14160  72 PASKRPSKDRHTKVEGRGRRIRMPAACAARIFQLTRELGHKSDGETIRWLLERSEPAIIEATGTGTIPAIAVsVNGT 148
                56899***********************************************************9999955532222 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136927.49778132IPR017887Transcription factor TCP subgroup
PfamPF036341.7E-2978152IPR005333Transcription factor, TCP
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0031347Biological Processregulation of defense response
Sequence ? help Back to Top
Protein Sequence    Length: 312 aa     Download sequence    Send to blast
MESNQEGKAV GEIDENLVLG NSSKVTMAHL SDPDPETNPG MLMKEEEDDP IAQHEVAFLE  60
PMTNSVILQS KPASKRPSKD RHTKVEGRGR RIRMPAACAA RIFQLTRELG HKSDGETIRW  120
LLERSEPAII EATGTGTIPA IAVSVNGTLK IPTDSPPQFE SDGGSGDLSR KRRKRNCTSE  180
FVDVNGQDSS ITSGLAPITA SNYGVNLMNV NTQHFLPFWS TAFVTGGPNQ GHMWAIPTVA  240
AAPPSFLNVS TRPLSSYVSN ASDAEPQMET NGGGGATQTL RDFSLEIYDK KELQFLGGSG  300
KNNTSPSSCH ET
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00007PBMTransfer from 495258Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp6g14160
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006401898.10.0transcription factor TCP19
RefseqXP_024012296.10.0transcription factor TCP19
SwissprotQ9LT891e-136TCP19_ARATH; Transcription factor TCP19
TrEMBLV4NBQ01e-180V4NBQ0_EUTSA; Uncharacterized protein
STRINGXP_006401898.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM125832530
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51910.21e-138TCP family protein