PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

495258

Common Name

ARALYDRAFT_495258

Organism

Arabidopsis lyrata

Taxonomic ID

81972

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

TCP

Protein Properties

Length: 300aa MW: 31932 Da PI: 6.2528

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
495258	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	115.5	7.2e-36	52	124	3	74
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.e 74 + k++ +++hTkv+gR+RR+R++a caar+F+L++eLG+++d++ti WLl+ a+pai+e+tgt++ +a ++ 495258 52 APKRPAKDRHTKVEGRGRRIRMPAGCAARVFQLTRELGHKSDGETIRWLLERAEPAIIEATGTGTVPAIAVsV 124 56899**********************************************************9888844431 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	2.4E-29	57	132	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	27.234	57	111	IPR017887	Transcription factor TCP subgroup

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0031347	Biological Process	regulation of defense response

Sequence ? help Back to Top
Protein Sequence Length: 300 aa Download sequence Send to blast
MESNQEGKAI QEIDQVATMT HLSDPNPKTK PGMMMLMKQE DGYLQPVMTK PAPKRPAKDR 60 HTKVEGRGRR IRMPAGCAAR VFQLTRELGH KSDGETIRWL LERAEPAIIE ATGTGTVPAI 120 AVSVNGTLKI PTSAPVENNG GGDGDGDGDL MKKRRKRNCT SEFVDVNEHD SCYSSVTSGL 180 APITASNYGV NILNVNTHGL MPFWPMGMGT AYVTGGPNQM GQMWAIPTVA TASFLNVGAT 240 PVSSYDVSNA SAAEPEMETS GGGGATQPLR DFSLEIYDKK ELQFLGGSGN SSPSSCHET*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	151	155	KKRRK

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00007	PBM	25215497	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	495258

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC237330	0.0	AC237330.1 Arabidopsis lyrata clone JGIFAFI-57C3, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020871355.1	0.0	transcription factor TCP19
Refseq	XP_020871356.1	0.0	transcription factor TCP19
Swissprot	Q9LT89	1e-176	TCP19_ARATH; Transcription factor TCP19
TrEMBL	D7MRK3	0.0	D7MRK3_ARALL; Uncharacterized protein
STRING	fgenesh2_kg.8__1074__AT5G51910.2	0.0	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM12583	25	30

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G51910.2	1e-179	TCP family protein

Link Out ? help Back to Top
Phytozome	495258
Entrez Gene	9301956