PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp6g14030
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family bHLH
Protein Properties Length: 208aa    MW: 23395.8 Da    PI: 10.3009
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp6g14030genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH22.81.6e-073178554
               HHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
        HLH  5 hnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54
               h  +Er+RR+++   f+ Lr  lP       ++K   ++ +  Av++Ik+ 
  Tp6g14030 31 HRNIERQRRQEMAILFASLRNQLPLqY---IKGKRAMSDHVNGAVNFIKDK 78
               899**********************66...9999999***********985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.37E-1023101IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.48E-62483No hitNo description
PROSITE profilePS5088810.6712678IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.0E-73197IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.3E-53178IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 208 aa     Download sequence    Send to blast
MDSCNNSKRP RHQSHILCER VETKKEKLLL HRNIERQRRQ EMAILFASLR NQLPLQYIKG  60
KRAMSDHVNG AVNFIKDKQT RIKDLAARRD ELKREISPSC SGPSSQTGSG SGSGSSRSDP  120
ASVKVQPCMS GLEVVVNSSA SGVDSWPLSR VLEVLHKQGL SVISSLTARV NERLMYTIQV  180
EVNSIVSFDL AWLQQKLIED LVHWTRGY
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp6g14030
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006401909.21e-109transcription factor bHLH120
SwissprotQ9FLI01e-102BH120_ARATH; Transcription factor bHLH120
TrEMBLV4LLM01e-109V4LLM0_EUTSA; Uncharacterized protein
STRINGXP_006401909.11e-109(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM29682767
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51790.12e-98bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]