PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Tp6g14000 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 208aa MW: 23525.8 Da PI: 10.0088 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 24.7 | 4.2e-08 | 28 | 79 | 2 | 55 |
HHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 + h +Er+RR+++ f+ Lr +lP ++K ++ + Av +Ik+ q Tp6g14000 28 KLLHRNIERQRRQEMAILFASLRNHLPLqY---IKGKRAMSDQVNGAVSFIKDTQ 79 567999**********************66...99999999**********9866 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 1.37E-11 | 23 | 101 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 8.17E-6 | 24 | 83 | No hit | No description |
PROSITE profile | PS50888 | 11.064 | 26 | 78 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.8E-5 | 28 | 79 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.6E-7 | 28 | 96 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 208 aa Download sequence Send to blast |
MEHCNNPIKK RHQSYMSQER DETKTEKKLL HRNIERQRRQ EMAILFASLR NHLPLQYIKG 60 KRAMSDQVNG AVSFIKDTQT RIHGLAARRD ELKREIGPIF SDHSSKTGSG SGNGSSRSDS 120 ASILVQPCVS GIEVVVNSSV SGVEASPLSR VLEVLHEQGL EVISSLTARV NERFMYTIQV 180 KVYSFVSFNL TWLQQKLIEE LLHSSKGY |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Tp6g14000 |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_006401909.2 | 1e-108 | transcription factor bHLH120 | ||||
Swissprot | Q9FLI0 | 1e-101 | BH120_ARATH; Transcription factor bHLH120 | ||||
TrEMBL | V4LLM0 | 1e-107 | V4LLM0_EUTSA; Uncharacterized protein | ||||
STRING | XP_006401909.1 | 1e-108 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2968 | 27 | 67 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G51790.1 | 1e-87 | bHLH family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|