PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp6g13070
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family bHLH
Protein Properties Length: 292aa    MW: 32655.8 Da    PI: 9.4579
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp6g13070genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH23.31.1e-07158204555
                HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
        HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                h+ +Er RR++i +++ +L+ l+P +    +k   Ka +L + ++Y++ Lq
  Tp6g13070 158 HSLAERVRREKICERMKTLQNLVPGC----NKVTGKAFMLDEIIKYVQFLQ 204
                999**********************9....677****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.75E-16151219IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.45E-8151208No hitNo description
PROSITE profilePS5088814.761153203IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.7E-16154217IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.8E-5158204IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.4E-8159209IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    Send to blast
MATFSYFQHY PHSLLDPLLF SSPNSSMKLS DFIDQSPLHS LPNTSTILDT SLNPFLDSYN  60
VEESSDVKKQ NNTITATITR SSSDDQLSHG PSITSAGNSR RRKSRNGSNS KEGVEGIKSK  120
KQRKDSSSDV KEKRTSEQEA PKDYIHVRAR RGQATDRHSL AERVRREKIC ERMKTLQNLV  180
PGCNKVTGKA FMLDEIIKYV QFLQNQVEFL STKLASISPM VYDFGLDLDG LIVSPEIGST  240
EVGAAFTNTV PTSTLFASLL DGPIVPTQVQ FHVIYVLFYR STDNILRRLK NG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
198103SRRRKS
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp6g13070
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006402045.11e-138transcription factor bHLH137
SwissprotQ93W881e-117BH137_ARATH; Transcription factor bHLH137
TrEMBLA0A1J3CIR41e-142A0A1J3CIR4_NOCCA; Uncharacterized protein (Fragment)
STRINGXP_006402045.11e-138(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM87962439
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50915.21e-106bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]