PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp6g13050

Organism

Thellungiella parvula

Taxonomic ID

98039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella

Family

bHLH

Protein Properties

Length: 292aa MW: 32305 Da PI: 7.0471

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp6g13050	genome	thellungiella	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	28.7	2.4e-09	156	203	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ +L+ l+P + +k Ka +L + ++Y++sLq Tp6g13050 156 SHSLAERVRREKISERMRTLQNLVPGC----DKVTGKALMLDEIINYVQSLQ 203 8***********************9....555***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	9.54E-11	150	207	No hit	No description
SuperFamily	SSF47459	3.79E-17	150	217	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.745	152	202	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	6.3E-17	152	214	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.6E-6	156	203	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	3.7E-10	158	208	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009739	Biological Process	response to gibberellin
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 292 aa Download sequence Send to blast
MATFSYFQHY PHSLLDPLLF PSANSSMKLS GFNDQNHLYS LPNTSTIADT SLNPFLDSYN 60 VAKTETSDVA KTDTTAITGS CSGDQISNGP STASAGKKLR RKTRNVSESK KGVEGRKSKK 120 QRNGSSSDFK EKRTSEQEAP KDYIHVRARR GQATDSHSLA ERVRREKISE RMRTLQNLVP 180 GCDKVTGKAL MLDEIINYVQ SLQNQVEFLS MKLASISPVV YDFGSDLDGM IVRPEIGSTE 240 VGADFTNTMP TTSPLFASLL DDPIIPTQEE GEEREKFVDR SGFNNNSFCS FS

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp6g13050

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AF428350	1e-120	AF428350.1 Arabidopsis thaliana unknown protein mRNA, complete cds.
GenBank	AY057549	1e-120	AY057549.1 Arabidopsis thaliana probable DNA-binding protein mRNA, complete cds.
GenBank	AY087602	1e-120	AY087602.1 Arabidopsis thaliana clone 36971 mRNA, complete sequence.
GenBank	AY113059	1e-120	AY113059.1 Arabidopsis thaliana At5g50917/At5g50917 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009132684.1	1e-167	PREDICTED: transcription factor bHLH137
Swissprot	Q93W88	1e-145	BH137_ARATH; Transcription factor bHLH137
TrEMBL	A0A1J3CIR4	1e-166	A0A1J3CIR4_NOCCA; Uncharacterized protein (Fragment)
TrEMBL	M4E1V3	1e-166	M4E1V3_BRARP; Uncharacterized protein
STRING	Bra022753.1-P	1e-167	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM8796	24	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G50915.2	1e-139	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]