PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp6g06380
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family WRKY
Protein Properties Length: 331aa    MW: 36887.1 Da    PI: 6.0989
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp6g06380genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY93.31.8e-29150210259
                --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
       WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                dDg++WrKYGqK++ g+++prsYYrCt++   +C+++k+v+rs+ dp+++e+tY+g+H+++
  Tp6g06380 150 DDGFSWRKYGQKDILGAKYPRSYYRCTFRntqNCWATKQVQRSDGDPTIFEVTYKGTHTCS 210
                8**************************998889**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081121.769144212IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.5E-28145211IPR003657WRKY domain
SuperFamilySSF1182904.05E-26148210IPR003657WRKY domain
SMARTSM007743.3E-41149211IPR003657WRKY domain
PfamPF031065.8E-27150209IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MDVLTWEQKS LLSELVHGLQ AAKQLHAQFR TAPSPPLYSS CSSSCLTTEM KEALLHQIIS  60
SYEKAILMLD GYTTLYSPTT EKVELTADPV ACTGKIPESP ASTNGSPRSQ EFLDVGSKDY  120
NLTSKKRKKL PQWTEKVRIS PEKGLEGPHD DGFSWRKYGQ KDILGAKYPR SYYRCTFRNT  180
QNCWATKQVQ RSDGDPTIFE VTYKGTHTCS QEILPSEKRG TKPNPKVTNY QNDLLDNLRT  240
NLTVRTNGIE SDDGFSFPIT PPFYSYDSID GNFSNGGGTF CHVGNFGPSD FTGLVSTNTS  300
TGSSPIFDVD FQFDPTAEID TCFHTFLHDS V
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A2e-18150209968OsWRKY45
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1124128KKRKK
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp6g06380
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006396960.10.0probable WRKY transcription factor 41
SwissprotQ8H0Y81e-151WRK41_ARATH; Probable WRKY transcription factor 41
TrEMBLV4LF341e-180V4LF34_EUTSA; Uncharacterized protein
STRINGXP_006396960.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19332783
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11070.11e-145WRKY family protein
Publications ? help Back to Top
  1. Duan S, et al.
    Functional characterization of a heterologously expressed Brassica napus WRKY41-1 transcription factor in regulating anthocyanin biosynthesis in Arabidopsis thaliana.
    Plant Sci., 2018. 268: p. 47-53
    [PMID:29362083]