PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp6g03820
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family bHLH
Protein Properties Length: 299aa    MW: 33888.6 Da    PI: 4.4313
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp6g03820genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH17.38.7e-061772151255
                HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
        HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                R +++ +++  L++l+ +      +K + a++L +AveYI  Lq
  Tp6g03820 177 RKEKLGDRITALQQLVSPF-----GKTDTASVLNEAVEYIMFLQ 215
                677888999*******998.....8*****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.553165214IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.06E-6175218No hitNo description
SuperFamilySSF474594.84E-11175226IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.0046176220IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.6E-9179225IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
MTEEFEIAGI STGTWWSSPT NAATAVFSGY SLPRPTETNL DITDFGWQNF DNKTNDHNDE  60
FMNMHNSFFE GLLDPNEQLL SDSWPKTTIP NAKSELLESF PFLDNMFLID SEAESFLDHE  120
IRDYKSKEQI TQDCKNLTSK RSEKTEESEA NSDEYSPRLL KRPRIETLSP LPSFKVRKEK  180
LGDRITALQQ LVSPFGKTDT ASVLNEAVEY IMFLQEQVTV LSNPDQNTRG SVQRQQRSDK  240
RSINTQEQEE CSSRRHVDLA SRGLCLMPIS ASYPVAAAAA SAAEMNTSDF WNLPFSVNL
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp6g03820
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006396624.21e-170LOW QUALITY PROTEIN: transcription factor bHLH114
SwissprotQ9M0X81e-159BH114_ARATH; Transcription factor bHLH114
TrEMBLV4L6X41e-178V4L6X4_EUTSA; Uncharacterized protein
STRINGBostr.2983s0058.1.p1e-180(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM144281719
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G05170.11e-116bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]