PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AT4G05170.1
Common NameBHLH114, C17L7.90, EN65
Organism
Arabidopsis thaliana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family bHLH
Protein Properties Length: 238aa    MW: 26801.1 Da    PI: 4.7213
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AT4G05170.1genomeTAIRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH20.39.8e-071151531255
                  HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  R +++ +++  L++l+ +      +K + a++L +AveYIk Lq
  AT4G05170.1 115 RKEKLGDRITALQQLVSPF-----GKTDTASVLNEAVEYIKFLQ 153
                  67788899********998.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.277103152IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.50E-7113156No hitNo description
SuperFamilySSF474591.44E-11113161IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.6E-4114158IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.6E-4115153IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.6E-10117161IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0001228Molecular Functiontranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0046983Molecular Functionprotein dimerization activity
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000293anatomyguard cell
PO:0003015anatomyprimary root differentiation zone
PO:0005059anatomyroot endodermis
PO:0008019anatomyleaf lamina base
PO:0009005anatomyroot
PO:0009025anatomyvascular leaf
PO:0009032anatomypetal
PO:0009046anatomyflower
PO:0009047anatomystem
PO:0020030anatomycotyledon
PO:0001054developmental stagevascular leaf senescent stage
PO:0007095developmental stageLP.08 eight leaves visible stage
PO:0007098developmental stageLP.02 two leaves visible stage
PO:0007115developmental stageLP.04 four leaves visible stage
PO:0007123developmental stageLP.06 six leaves visible stage
PO:0007611developmental stagepetal differentiation and expansion stage
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    Send to blast
MNMHNSFFEG LLIDPNDQLL PDPWSKSTIP NAKSELLENF PFLDNMFLVD SEAESLLDHE  60
IRNHKSSKEQ ITQDYKNLTS KRSEELEENS DEYSPRLLKR PRLETLSPLP SFKVRKEKLG  120
DRITALQQLV SPFGKTDTAS VLNEAVEYIK FLQEQVTVLS NPEQNTIGSV QQQQCSNKKS  180
INTQGEVEED ECSPRRYVDL SSRGLCLMPI SASYPVAAAA ASAAEMNVHL VSGIFHSL
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO794654320.0
Genevisible255264_at0.0
Expression AtlasAT4G05170-
AtGenExpressAT4G05170-
ATTED-IIAT4G05170-
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Differentiating root endodermis. {ECO:0000269|PubMed:16581911}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAT4G05170.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
T-DNA ExpressAT4G05170
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0154460.0BT015446.1 Arabidopsis thaliana At4g05170 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001319872.11e-175basic helix-loop-helix (bHLH) DNA-binding superfamily protein
SwissprotQ9M0X81e-176BH114_ARATH; Transcription factor bHLH114
TrEMBLA0A178V2881e-154A0A178V288_ARATH; Uncharacterized protein
STRINGAT4G05170.11e-176(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM144281719
Representative plantOGRP13421337
Publications ? help Back to Top
  1. Heim MA, et al.
    The basic helix-loop-helix transcription factor family in plants: a genome-wide study of protein structure and functional diversity.
    Mol. Biol. Evol., 2003. 20(5): p. 735-47
    [PMID:12679534]
  2. Toledo-Ortiz G,Huq E,Quail PH
    The Arabidopsis basic/helix-loop-helix transcription factor family.
    Plant Cell, 2003. 15(8): p. 1749-70
    [PMID:12897250]
  3. Bailey PC, et al.
    Update on the basic helix-loop-helix transcription factor gene family in Arabidopsis thaliana.
    Plant Cell, 2003. 15(11): p. 2497-502
    [PMID:14600211]
  4. Thao S, et al.
    Results from high-throughput DNA cloning of Arabidopsis thaliana target genes using site-specific recombination.
    J. Struct. Funct. Genomics, 2004. 5(4): p. 267-76
    [PMID:15750721]
  5. Lee JY, et al.
    Transcriptional and posttranscriptional regulation of transcription factor expression in Arabidopsis roots.
    Proc. Natl. Acad. Sci. U.S.A., 2006. 103(15): p. 6055-60
    [PMID:16581911]
  6. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]