PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp6g01800
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family NAC
Protein Properties Length: 655aa    MW: 75067.9 Da    PI: 5.4945
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp6g01800genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM68.51.9e-21121443128
        NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikev.diykvePwdLp..kkvkaeekewyfFskrdk....kyatgkrknr.atksgyWkatgkdkevls 94 
                +G r++Pt+ elv + L++++e++k +   +i+++ ++y+ ePw L+  ++v+ +++ew++F++r+k    k+a +kr++r ++ sg+Wk+tg+ +++++
  Tp6g01800  12 QGSRYSPTNVELV-NILRQRIEREKRSR--FITDIhNLYEKEPWLLQhvRHVRFKNNEWFYFVTRKKppgaKKADSKRPSRqVVGSGRWKTTGTLTQIKD 108
                699**********.78999999999655..7888889*********94336777999*****99987333355578899998889*************** PP

        NAM  95 kkgelvglkktLvfykgra..pkgektdWvmheyrl 128
                k+g +vg  + + f  +r+  ++   t W mhe+ l
  Tp6g01800 109 KDGVKVGSMQNINFKAKRKteEDEIPTGWKMHEFLL 144
                ***************65540044568********76 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100528.02310160IPR003441NAC domain
SuperFamilySSF1019411.83E-2412159IPR003441NAC domain
PfamPF023651.6E-1013142IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 655 aa     Download sequence    Send to blast
MTAKVARRSQ IQGSRYSPTN VELVNILRQR IEREKRSRFI TDIHNLYEKE PWLLQHVRHV  60
RFKNNEWFYF VTRKKPPGAK KADSKRPSRQ VVGSGRWKTT GTLTQIKDKD GVKVGSMQNI  120
NFKAKRKTEE DEIPTGWKMH EFLLDKPGFQ EVVLCRIRFN PRKNNARYAP RLKPLMIGLE  180
REHGSTSVEN NFQNHMISIH HGAAADSGEE IQFLDAPVET HQVQGVEQWT GSYSAAQHQQ  240
IMGQDSNYPL LNGGMEQHQD FGSYNQQKNH VFGHMEQYDH GFGDMVEYPN QYLVQETADP  300
RQVPVTKNQA LNEEQQWNEF SGPLSAHQYF GQDMVPMTQC LMVHHQEQHL AAQHQHVSVN  360
GSMEQHQDFG SSGNLLGESL DQQHDHNLGG QATYLSLMED PQQQCQNQFC RQERDPSQQQ  420
WNRYPGPYSA QLYDQGMMED QDFGYSALCL AENHQCLGFN NDLSALGQAN HLSPMEQQFF  480
QTDYQNQFCG QHTDPSQVPN MMNQALEEQH NVSWSAQPCG QYKAQNNALL TVPMKTQQKH  540
DNVVRNSAAQ LQLEEQDYVS LISQTMEEQA TDLPMNQGID ESHGGIVGSH THNELTLQSL  600
GDEMYREMDS EMANFGNEEW AQQLGENTPE EEAELTAALT NCTTAESLFN YFLSN
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp6g01800
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A3N6PKP11e-168A0A3N6PKP1_BRACR; Uncharacterized protein
STRINGBra036314.1-P1e-158(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM144241018
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27300.15e-15NTM1-like 8