PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp6g00870
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family WRKY
Protein Properties Length: 299aa    MW: 32408.8 Da    PI: 7.5
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp6g00870genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.32.1e-30130188259
                --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
       WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                +D ++WrKYGqK++kgs++pr+YYrC+++ gC ++k+ver++++p+++++tY+ eHnh+
  Tp6g00870 130 SDVWAWRKYGQKPIKGSPYPRGYYRCSTSkGCLARKQVERNRSNPTMFIVTYTAEHNHP 188
                69************************9988****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.807.6E-30119190IPR003657WRKY domain
PROSITE profilePS5081135.576124190IPR003657WRKY domain
SuperFamilySSF1182908.11E-26126190IPR003657WRKY domain
SMARTSM007746.9E-35129189IPR003657WRKY domain
PfamPF031062.0E-25131188IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010150Biological Processleaf senescence
GO:0010200Biological Processresponse to chitin
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
MADDWDLHAV VRGCSSVSSS ATTTTTVFSG GVSSQTSPMF TFERQSNAVV FGEIRDLYTP  60
FTQESNVSSF SCLKYPEEPR QRQNQKRPLS LSASSGSVTS KPTGSNTSRS KRRKIQHKKV  120
CHVAAEALNS DVWAWRKYGQ KPIKGSPYPR GYYRCSTSKG CLARKQVERN RSNPTMFIVT  180
YTAEHNHPAP THRNSLAGST RQKSSDQPTT KSPTTTIVTY SSSPVTSTDE IVLPVEDIAV  240
GDLDGDEDLL SLSDTVVSED FFEGLEEFAA GDSFSGNSAP ASFDLSWVVS SAATASGGI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B4e-201311911880Disease resistance protein RRS1
5w3x_D4e-201311911880Disease resistance protein RRS1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in the expression of defense genes in innate immune response of plants. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Activates WRKY 29, SIRK and its own promoters. {ECO:0000269|PubMed:11875555}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00422DAPTransfer from AT4G01250Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp6g00870
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced after flagellin treatment. {ECO:0000269|PubMed:11875555}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY1667200.0AY166720.1 Capsella rubella WRKY transcription factor 22 (WRKY22) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001288962.10.0WRKY transcription factor 22
RefseqNP_192034.10.0WRKY family transcription factor
RefseqXP_002872898.10.0WRKY transcription factor 22
RefseqXP_013657874.20.0WRKY transcription factor 22-like isoform X1
SwissprotO046090.0WRK22_ARATH; WRKY transcription factor 22
TrEMBLA0A3P5XTU40.0A0A3P5XTU4_BRACM; Uncharacterized protein
STRINGAT4G01250.10.0(Arabidopsis thaliana)
STRINGBra037368.1-P0.0(Brassica rapa)
STRINGfgenesh2_kg.6__3581__AT4G01250.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM78102741
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01250.11e-148WRKY family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Coego A, et al.
    The TRANSPLANTA collection of Arabidopsis lines: a resource for functional analysis of transcription factors based on their conditional overexpression.
    Plant J., 2014. 77(6): p. 944-53
    [PMID:24456507]
  3. Gkizi D, et al.
    The Innate Immune Signaling System as a Regulator of Disease Resistance and Induced Systemic Resistance Activity Against Verticillium dahliae.
    Mol. Plant Microbe Interact., 2016. 29(4): p. 313-23
    [PMID:26780421]
  4. Kloth KJ, et al.
    AtWRKY22 promotes susceptibility to aphids and modulates salicylic acid and jasmonic acid signalling.
    J. Exp. Bot., 2016. 67(11): p. 3383-96
    [PMID:27107291]
  5. Camborde L, et al.
    Detection of nucleic acid-protein interactions in plant leaves using fluorescence lifetime imaging microscopy.
    Nat Protoc, 2017. 12(9): p. 1933-1950
    [PMID:28837131]
  6. Wang S, et al.
    Bacillus cereus AR156 Activates Defense Responses to Pseudomonas syringae pv. tomato in Arabidopsis thaliana Similarly to flg22.
    Mol. Plant Microbe Interact., 2018. 31(3): p. 311-322
    [PMID:29090631]