PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp6g00040
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family ERF
Protein Properties Length: 175aa    MW: 19510.2 Da    PI: 10.7786
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp6g00040genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.81.8e-2056105355
        AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                ykGVr+++ +g+++AeIrdp++ng  +r +lg++ t+eeAa a+++a+ k++g
  Tp6g00040  56 YKGVRRRP-WGKYAAEIRDPNKNG--ARMWLGTYETPEEAAMAYDRAAFKIRG 105
                9*******.***********8887..*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.23E-3054115No hitNo description
SuperFamilySSF541716.08E-2455114IPR016177DNA-binding domain
PROSITE profilePS5103224.2155113IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.1E-3255114IPR001471AP2/ERF domain
SMARTSM003802.6E-3855119IPR001471AP2/ERF domain
PfamPF008471.3E-1455105IPR001471AP2/ERF domain
PRINTSPR003672.9E-135667IPR001471AP2/ERF domain
PRINTSPR003672.9E-1395115IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 175 aa     Download sequence    Send to blast
MEGELRWDNN GSAVLDWIRR QLLEEDDLDL TASGSLAIAI DSSSSSSVPP RRGANYKGVR  60
RRPWGKYAAE IRDPNKNGAR MWLGTYETPE EAAMAYDRAA FKIRGSKAKL NFPHLISTHE  120
AEPVRVTNGN KRQRSPEPKS PAAKRRNNIN IINLTARLPS LGLKLSISKT PTMTL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-3052120270ATERF1
3gcc_A3e-3052120270ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtActs as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. {ECO:0000269|PubMed:11950980}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp6g00040
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Strongly induced by wounding. Induced by Pseudomonas syringae tomato (both virulent and avirulent avrRpt2 strains), independently of PAD4. Also induced by methyl jasmonate (MeJA) independently of JAR1, but seems to not be affected by ethylene. Induction by salicylic acid (SA) is controlled by growth and/or developmental conditions, and seems to be more efficient and independent of PAD4 in older plants. {ECO:0000269|PubMed:11950980, ECO:0000269|PubMed:12068110}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009111538.15e-83PREDICTED: ethylene-responsive transcription factor 13-like
RefseqXP_013694248.15e-83ethylene-responsive transcription factor 13-like
SwissprotQ8L9K12e-42ERF99_ARATH; Ethylene-responsive transcription factor 13
TrEMBLA0A3N6QHF82e-82A0A3N6QHF8_BRACR; Uncharacterized protein
STRINGscaffold_604310.18e-82(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44840.17e-43ethylene-responsive element binding factor 13
Publications ? help Back to Top
  1. Maimbo M,Ohnishi K,Hikichi Y,Yoshioka H,Kiba A
    Induction of a small heat shock protein and its functional roles in Nicotiana plants in the defense response against Ralstonia solanacearum.
    Plant Physiol., 2007. 145(4): p. 1588-99
    [PMID:17965181]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]