PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp5g33010
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family ARF
Protein Properties Length: 578aa    MW: 63282.8 Da    PI: 5.2605
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp5g33010genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B374.21.5e-23120221199
                EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
         B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                f k+ltpsd+++ g +++p+ +a++          ++ +  +l ++d +g +W++++iyr++++r++lt+GW++Fv+ ++L +gD+vvF+  ++s  e++
  Tp5g33010 120 FAKILTPSDANNGGGFSVPRYCADSVfppldfqADPPVQ--KLFITDIHGVVWDFRHIYRGTPRRHLLTTGWSKFVNNKKLIAGDSVVFM--RKSVDEMF 215
                89*********************999*****95444444..8************************************************..44788899 PP

                EEEE-S CS
         B3  94 vkvfrk 99 
                ++v+r+
  Tp5g33010 216 IGVRRA 221
                ***997 PP
2Auxin_resp86.55.2e-29277359183
  Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                 a+++a+++ +FevvY+P a++s+Fvvk+e+ve+++ + +++G+R+km +etedss++++ +G+++++ + ++  W++S+W++L+
   Tp5g33010 277 AINKAAKGLPFEVVYYPTAGWSDFVVKAEDVESSMATFWTPGTRVKMPMETEDSSRITWfQGIISSTFQ-ETGPWRGSPWKQLQ 359
                 678999*****************************************************9999999988.8889********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019363.14E-29111225IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.0E-32114221IPR015300DNA-binding pseudobarrel domain
SMARTSM010192.2E-20120222IPR003340B3 DNA binding domain
PfamPF023624.8E-21120221IPR003340B3 DNA binding domain
PROSITE profilePS5086312.633120222IPR003340B3 DNA binding domain
CDDcd100175.33E-20120216No hitNo description
PfamPF065076.8E-24277359IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0010208Biological Processpollen wall assembly
GO:0048830Biological Processadventitious root development
GO:0052543Biological Processcallose deposition in cell wall
GO:0005634Cellular Componentnucleus
GO:0000987Molecular Functioncore promoter proximal region sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 578 aa     Download sequence    Send to blast
MSPSASATAD IPREVDPRIW RACAGASVQI PSLYSRVYYF PQGHVEHCCA SSVINSFPSS  60
TAPVPCVVNS IELLADPITD EVFAHLALQP VAPEQFIPPK LPRFGSYLID EEENNKVVTF  120
AKILTPSDAN NGGGFSVPRY CADSVFPPLD FQADPPVQKL FITDIHGVVW DFRHIYRGTP  180
RRHLLTTGWS KFVNNKKLIA GDSVVFMRKS VDEMFIGVRR APISNNGGTG FYGGGDEFYS  240
GYYPSSGGGA KEDDASAKKG FRRTGKGKLT AEAVSEAINK AAKGLPFEVV YYPTAGWSDF  300
VVKAEDVESS MATFWTPGTR VKMPMETEDS SRITWFQGII SSTFQETGPW RGSPWKQLQI  360
TWDEPEILQN LKRVNPWQVE TVDNANQLHA TYPPTKRLKF PHTANGFSSG EGEMLYSGRG  420
LSSAAPGGDP YLFPYTTFPA GMQGARHCEF GSFNSTGFIE ENPPRLCINN FFSPLPGLGK  480
VSTEMNFGSP PSDDLSPNSN TTNLSSGNDP VGNRGPNSAR ANSFQLFGKV INVQDLSESG  540
LAESGLYEED GSKESSDNEV LDETQLSLTY APQRMRRV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-671538751395Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp5g33010
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006390047.10.0auxin response factor 17
SwissprotQ84WU60.0ARFQ_ARATH; Auxin response factor 17
TrEMBLV4KJ900.0V4KJ90_EUTSA; Auxin response factor
STRINGXP_006390047.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM58027130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77850.10.0auxin response factor 17
Publications ? help Back to Top
  1. Shi ZH, et al.
    Overexpression of AtTTP affects ARF17 expression and leads to male sterility in Arabidopsis.
    PLoS ONE, 2015. 10(3): p. e0117317
    [PMID:25822980]
  2. de Lucas M, et al.
    Transcriptional Regulation of Arabidopsis Polycomb Repressive Complex 2 Coordinates Cell-Type Proliferation and Differentiation.
    Plant Cell, 2016. 28(10): p. 2616-2631
    [PMID:27650334]
  3. Wójcikowska B,Gaj MD
    Expression profiling of AUXIN RESPONSE FACTOR genes during somatic embryogenesis induction in Arabidopsis.
    Plant Cell Rep., 2017. 36(6): p. 843-858
    [PMID:28255787]
  4. Wang B, et al.
    Fine regulation of ARF17 for anther development and pollen formation.
    BMC Plant Biol., 2017. 17(1): p. 243
    [PMID:29258431]
  5. Wójcik AM,Nodine MD,Gaj MD
    miR160 and miR166/165 Contribute to the LEC2-Mediated Auxin Response Involved in the Somatic Embryogenesis Induction in Arabidopsis.
    Front Plant Sci, 2017. 8: p. 2024
    [PMID:29321785]
  6. Lin JS, et al.
    MicroRNA160 Modulates Plant Development and Heat Shock Protein Gene Expression to Mediate Heat Tolerance in Arabidopsis.
    Front Plant Sci, 2018. 9: p. 68
    [PMID:29449855]