PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp5g32800 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
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Family | ERF | ||||||||
Protein Properties | Length: 234aa MW: 25901.7 Da PI: 6.0174 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 58 | 2.4e-18 | 40 | 89 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +ykGVr ++ +g+Wv+eIr p ++++r++lg++ tae Aa+a++aa ++l+g Tp5g32800 40 KYKGVRMRS-WGSWVSEIRAP---NQKTRIWLGSYSTAEAAARAYDAALLCLKG 89 8*****998.**********9...336*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 2.89E-18 | 39 | 98 | No hit | No description |
SuperFamily | SSF54171 | 5.89E-20 | 40 | 98 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 3.0E-35 | 40 | 103 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 21.918 | 40 | 97 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.3E-30 | 40 | 98 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.6E-11 | 40 | 89 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.5E-9 | 41 | 52 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.5E-9 | 63 | 79 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 234 aa Download sequence Send to blast |
MVKQERKIQV TTSSSSLSLS SSSASSLALH HQSCKNKIQK YKGVRMRSWG SWVSEIRAPN 60 QKTRIWLGSY STAEAAARAY DAALLCLKGP KANLNFPHIT TTSPFLIDVD EKTLLSPKYI 120 QKVAAQAANS ISLDPFAPRS SSNDDNDGLH HHPSPSSSAA SSPTDDHHND DDLVSLMGSF 180 VDEHVSLMDL SWYDQNEMFF INGASFDYSP QLVSSKTTMD EFYDDADIQL WSFS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 7e-15 | 40 | 98 | 14 | 73 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00246 | DAP | Transfer from AT1G77640 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp5g32800 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | - | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC189370 | 0.0 | AC189370.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB047M06, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006390070.1 | 1e-106 | ethylene-responsive transcription factor ERF013 | ||||
Swissprot | Q9CAP4 | 6e-86 | ERF13_ARATH; Ethylene-responsive transcription factor ERF013 | ||||
TrEMBL | A0A1J3HIC0 | 1e-113 | A0A1J3HIC0_NOCCA; Uncharacterized protein (Fragment) | ||||
TrEMBL | A0A1J3JMN8 | 1e-113 | A0A1J3JMN8_NOCCA; Uncharacterized protein (Fragment) | ||||
STRING | XP_006390070.1 | 1e-105 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2999 | 27 | 67 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G77640.1 | 2e-84 | ERF family protein |