PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp5g31580
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family NAC
Protein Properties Length: 343aa    MW: 38750.2 Da    PI: 6.3764
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp5g31580genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM167.25.4e-52221571129
        NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk..... 95 
                lppGfrFhPtdeel+++yL+ kv +  l    +i+evd++++ePw+Lp ++k +e+ewyf+s rd+ky+tg r+nrat++gyWkatgkdkev+++     
  Tp5g31580  22 LPPGFRFHPTDEELITFYLASKVFHGGLCG-IHIAEVDLNRCEPWELPDMAKMGEREWYFYSLRDRKYPTGLRTNRATTAGYWKATGKDKEVFAAggggg 120
                79*************************877.78***************8888999***************************************988888 PP

        NAM  96 ...kgelvglkktLvfykgrapkgektdWvmheyrle 129
                   +g+lvg+kktLvfykgrap+g kt+Wvmheyrle
  Tp5g31580 121 gggGGALVGMKKTLVFYKGRAPRGLKTKWVMHEYRLE 157
                7777777****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.48E-6118178IPR003441NAC domain
PROSITE profilePS5100557.53222178IPR003441NAC domain
PfamPF023659.0E-2723156IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010014Biological Processmeristem initiation
GO:0010199Biological Processorgan boundary specification between lateral organs and the meristem
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 343 aa     Download sequence    Send to blast
MMLAVEDVLS ELAGEERNDR GLPPGFRFHP TDEELITFYL ASKVFHGGLC GIHIAEVDLN  60
RCEPWELPDM AKMGEREWYF YSLRDRKYPT GLRTNRATTA GYWKATGKDK EVFAAGGGGG  120
GGGGGALVGM KKTLVFYKGR APRGLKTKWV MHEYRLETDL SHRHTCKEEW VICRVFNKTG  180
DRKNVGLHSQ ISYLHNTSLS TTHHHHNHNH YHHLEALPPL QESSKTPLNF PSLLYDDTHQ  240
NYNNNLLHGS SGHNVDELKA LINPVVSQLN EIIFSPENYN YNNNNDEDDN FGVKTEQYSN  300
GGNNDLDVRD YLENSLFQEA GYNLLGLSSS PGPLMLLDSP YVL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-482217817165NO APICAL MERISTEM PROTEIN
1ut4_B2e-482217817165NO APICAL MERISTEM PROTEIN
1ut7_A2e-482217817165NO APICAL MERISTEM PROTEIN
1ut7_B2e-482217817165NO APICAL MERISTEM PROTEIN
3swm_A2e-482217820168NAC domain-containing protein 19
3swm_B2e-482217820168NAC domain-containing protein 19
3swm_C2e-482217820168NAC domain-containing protein 19
3swm_D2e-482217820168NAC domain-containing protein 19
3swp_A2e-482217820168NAC domain-containing protein 19
3swp_B2e-482217820168NAC domain-containing protein 19
3swp_C2e-482217820168NAC domain-containing protein 19
3swp_D2e-482217820168NAC domain-containing protein 19
3ulx_A2e-482218115171Stress-induced transcription factor NAC1
4dul_A2e-482217817165NAC domain-containing protein 19
4dul_B2e-482217817165NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator. Involved in molecular mechanisms regulating shoot apical meristem (SAM) formation during embryogenesis and organ separation. Required for axillary meristem initiation and separation of the meristem from the main stem. May act as an inhibitor of cell division. {ECO:0000269|PubMed:12837947, ECO:0000269|PubMed:17122068}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00241DAPTransfer from AT1G76420Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp5g31580
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By BRM, at the chromatin level, and conferring a very specific spatial expression pattern. {ECO:0000269|PubMed:16854978}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009106303.10.0PREDICTED: protein CUP-SHAPED COTYLEDON 3
RefseqXP_013717884.10.0protein CUP-SHAPED COTYLEDON 3
SwissprotQ9S8510.0NAC31_ARATH; Protein CUP-SHAPED COTYLEDON 3
TrEMBLA0A397YS590.0A0A397YS59_BRACM; Uncharacterized protein
TrEMBLM4DGX40.0M4DGX4_BRARP; Uncharacterized protein
STRINGBra015750.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40028174
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76420.11e-166NAC family protein
Publications ? help Back to Top
  1. Chen C, et al.
    Transcriptome profiling reveals roles of meristem regulators and polarity genes during fruit trichome development in cucumber (Cucumis sativus L.).
    J. Exp. Bot., 2014. 65(17): p. 4943-58
    [PMID:24962999]
  2. Gonçalves B, et al.
    A conserved role for CUP-SHAPED COTYLEDON genes during ovule development.
    Plant J., 2015. 83(4): p. 732-42
    [PMID:26119568]
  3. Balkunde R,Kitagawa M,Xu XM,Wang J,Jackson D
    SHOOT MERISTEMLESS trafficking controls axillary meristem formation, meristem size and organ boundaries in Arabidopsis.
    Plant J., 2017. 90(3): p. 435-446
    [PMID:28161901]
  4. Espinosa-Ruiz A, et al.
    TOPLESS mediates brassinosteroid control of shoot boundaries and root meristem development in Arabidopsis thaliana.
    Development, 2017. 144(9): p. 1619-1628
    [PMID:28320734]
  5. Koyama T,Sato F,Ohme-Takagi M
    Roles of miR319 and TCP Transcription Factors in Leaf Development.
    Plant Physiol., 2017. 175(2): p. 874-885
    [PMID:28842549]