PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp5g30530
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family bZIP
Protein Properties Length: 183aa    MW: 19708.9 Da    PI: 6.5137
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp5g30530genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_139.61.1e-124080545
               CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
     bZIP_1  5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL 45
               ++ +rkq+NRe+ArrsR RK++ +e L+  v+ L +eN++ 
  Tp5g30530 40 RKRKRKQSNRESARRSRMRKQKLVEDLTSQVAHLRKENSQI 80
               5789**********************************875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1706.0E-113585No hitNo description
SMARTSM003388.0E-1636100IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.70338101IPR004827Basic-leucine zipper domain
PfamPF001703.1E-104080IPR004827Basic-leucine zipper domain
SuperFamilySSF579593.0E-114092No hitNo description
CDDcd147026.63E-194191No hitNo description
PROSITE patternPS0003604358IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009845Biological Processseed germination
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 183 aa     Download sequence    Send to blast
MNKTEMGSST SGNCSSISTT GLQNSGSESD LRQRDLIDER KRKRKQSNRE SARRSRMRKQ  60
KLVEDLTSQV AHLRKENSQI VAGIAVTTQH YVTIEAENSI LRAQLMELNH RLDSLNEIVD  120
FVESSSSAGG FGMETGHGGG IIDCGGGGGG GFYDGVMNPL NLGFYNQPIM ASASTAAGDV  180
FDC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13944RKRKRK
23960RKRKRKQSNRESARRSRMRKQK
35259RRSRMRKQ
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the DNA G-box motif 5'-CACGTG-3' of MAN7 promoter. Involved in the positive regulation of seed germination through MAN7 gene activation. MAN7 is required for both, loosening of the micropylar endosperm, and rupture of the seed coat in germinating seeds. {ECO:0000269|PubMed:23461773}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00239DAPTransfer from AT1G75390Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp5g30530
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006390310.11e-105bZIP transcription factor 44
SwissprotC0Z2L51e-104BZP44_ARATH; bZIP transcription factor 44
TrEMBLA0A1J3EVL31e-103A0A1J3EVL3_NOCCA; Ocs element-binding factor 1 (Fragment)
STRINGXP_006390310.11e-104(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM50128154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75390.13e-82basic leucine-zipper 44
Publications ? help Back to Top
  1. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]
  2. Pedrotti L, et al.
    Snf1-RELATED KINASE1-Controlled C/S1-bZIP Signaling Activates Alternative Mitochondrial Metabolic Pathways to Ensure Plant Survival in Extended Darkness.
    Plant Cell, 2018. 30(2): p. 495-509
    [PMID:29348240]