PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp5g29430
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family C2H2
Protein Properties Length: 643aa    MW: 74173.6 Da    PI: 4.9413
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp5g29430genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.20.00027614633221
                EETTTTEEESSHHHHHHHHH CS
    zf-C2H2   2 kCpdCgksFsrksnLkrHir 21 
                +C  Cg+ F ++s L +Hi 
  Tp5g29430 614 ECDRCGEEFESRSKLFKHIA 633
                5*****************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.287.1106.4E-23587IPR001623DnaJ domain
SuperFamilySSF465651.57E-226114IPR001623DnaJ domain
SMARTSM002712.3E-201073IPR001623DnaJ domain
CDDcd062571.85E-141170IPR001623DnaJ domain
PROSITE profilePS5007619.0181181IPR001623DnaJ domain
PfamPF002263.8E-201278IPR001623DnaJ domain
PRINTSPR006251.9E-141331IPR001623DnaJ domain
PRINTSPR006251.9E-143146IPR001623DnaJ domain
PRINTSPR006251.9E-145373IPR001623DnaJ domain
PROSITE patternPS0063605877IPR018253DnaJ domain, conserved site
SuperFamilySSF576675.56E-14301349No hitNo description
SMARTSM004511.4E-7306340IPR003604Zinc finger, U1-type
PfamPF121713.6E-10308334IPR022755Zinc finger, double-stranded RNA binding
SMARTSM003550.82309333IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280311333IPR007087Zinc finger, C2H2
PROSITE profilePS501579.702613642IPR007087Zinc finger, C2H2
SMARTSM003553.6613637IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280615637IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 643 aa     Download sequence    Send to blast
MASSSRSEKR CLYEVLGISK ESSSDEIRSS YRRLALQRHP DKLIKAGGLS EVEATAQFQE  60
LVHAYEVLSD PKERAWYDSH RSQILFADHG SSGGSKSGGM PGGSVPDLFA FFSTTVYSGY  120
SDTGKGFYKV YFDVFNSVYL NEIKFARTLG LRMDSVREAP IMGNLESPYS QVTAFYNYWL  180
GFSTVMDFCW VDEYDVMAGP NRRWRRKMEE ENKKVRKKAK KEYNETVRGL AAFVKKRDKR  240
VIDMMVKKNA EMELKKAEER ERKKKMDRER LERAMNYEEP DWAKAQDGEE EEAGEEDGDD  300
DAKRKNEQLY CIVCSKKFKS EKQWKNHEQS KKHKEKVAEL RESFSDVEDE KEEEEEDEEE  360
INEPPENVEE LHEKLRQGLN VDDKEEVEEK DVEEEEADET DDEYFIAEED VKGSRESEDE  420
DVDDEMSLLK KMVSGQKNKR KNVVSRKEVE VQVEIESDTA ELSEFDNQKS TGRNRKGKKE  480
RNKRNAGKDT ADDAKKVQIP GDDSNTDDNV NETDPASGAF EDYQKDEPDP MAYDNRKSTG  540
RRRRSKKGKD KNNLGGLMEK SSEADDRNGD VEESHSETFE DRSEYIEHKK APRSKKSTRG  600
MKSKGTSKKT SNNECDRCGE EFESRSKLFK HIADTGHATV KSR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1bq0_A3e-11980268DNAJ
1xbl_A2e-11980268DNAJ
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1212220KKVRKKAKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp5g29430
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006390445.10.0DNAJ protein JJJ1 homolog
SwissprotQ9C9110.0JJJ1_ARATH; DNAJ protein JJJ1 homolog
TrEMBLV4M9A40.0V4M9A4_EUTSA; Uncharacterized protein
STRINGXP_006390445.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM88692230
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G74250.10.0DNAJ heat shock N-terminal domain-containing protein