PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp5g29310 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
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Family | MYB | ||||||||
Protein Properties | Length: 327aa MW: 36604.6 Da PI: 5.4288 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 57.3 | 3.5e-18 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++l+ +v+++G g W+t + + g++R++k+c++rw +yl Tp5g29310 14 KGAWTQEEDQKLIAYVQRHGEGGWRTLPDKAGLKRCGKSCRLRWANYL 61 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 58.1 | 1.9e-18 | 67 | 111 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg +++eE++ ++++++ +G++ W++Iar+++ gRt++++k++w+++ Tp5g29310 67 RGEFSQEEEDSIINLHAIHGNK-WSAIARRLP-GRTDNEIKNHWNTH 111 899*******************.*********.************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.8E-24 | 5 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 17.372 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.01E-30 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.4E-13 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.8E-16 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.28E-10 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 26.611 | 62 | 116 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 9.7E-27 | 65 | 117 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.0E-17 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.9E-16 | 67 | 111 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 8.28E-13 | 69 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009625 | Biological Process | response to insect | ||||
GO:0009506 | Cellular Component | plasmodesma | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 327 aa Download sequence Send to blast |
MVRTPCCRAE GLKKGAWTQE EDQKLIAYVQ RHGEGGWRTL PDKAGLKRCG KSCRLRWANY 60 LRPDIKRGEF SQEEEDSIIN LHAIHGNKWS AIARRLPGRT DNEIKNHWNT HIKKRLVKNG 120 IDPLTHKSLL DGASKSSDHP MTPPDKSGVH QEEDDQKSDN NKSSGSSSAR FLNRVANRFG 180 KRINHSVLSD IIGNGGPFTS HTTPTTSATE SEKSTSSSST PDSSNLLIDQ NMIIDATSLS 240 SSTFSNDTSD PLMYDNIFED IEDMTGFSSR FLNDVESHGD EDFLMLDESC LESTLFMKEL 300 TMILQEDKID TTTLNGIVFE SEETTFL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 1e-28 | 12 | 116 | 5 | 108 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in glucosinolates biosynthesis. {ECO:0000269|PubMed:23580754, ECO:0000269|PubMed:23943862}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp5g29310 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ670120 | 0.0 | KJ670120.1 Brassica napus MYB transcription factor 122 (MYB122.1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013652381.1 | 0.0 | transcription factor MYB122-like | ||||
Swissprot | Q9C9C8 | 1e-164 | MY122_ARATH; Transcription factor MYB122 | ||||
TrEMBL | A0A397YRF0 | 0.0 | A0A397YRF0_BRACM; Uncharacterized protein | ||||
TrEMBL | A0A3P6BA85 | 0.0 | A0A3P6BA85_BRACM; Uncharacterized protein | ||||
TrEMBL | M4DHG2 | 0.0 | M4DHG2_BRARP; Uncharacterized protein | ||||
STRING | Bra015939.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G74080.1 | 1e-140 | myb domain protein 122 |