PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp5g27440 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 224aa MW: 25407.9 Da PI: 8.6195 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 70.5 | 1.5e-22 | 50 | 98 | 1 | 49 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 k i+++ +rqvtfskRrng++KKA ELSvLC+a++ +i fs ++y + Tp5g27440 50 KEIKEENRRQVTFSKRRNGLFKKAAELSVLCGAQIGIITFSRCERIYAF 98 6799**************************************9999988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 4.9E-27 | 42 | 101 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 2.75E-23 | 42 | 112 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 25.455 | 42 | 102 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.2E-20 | 44 | 64 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 4.0E-22 | 52 | 98 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.2E-20 | 64 | 79 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.2E-20 | 79 | 100 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 224 aa Download sequence Send to blast |
MEDGEASSTT CFPFTGQKPL KTPNFQVKQQ KETKLQKPKT TKGRQKIEIK EIKEENRRQV 60 TFSKRRNGLF KKAAELSVLC GAQIGIITFS RCERIYAFGN VDTLIEKYLR KTPVMLRSQL 120 GGDVAAGGAD EDGRMWWERA VESVPEEEMD EYMKGLSGLR ENLWTRICEM GGDPTVQMNA 180 QAFPNPMAPV DWKMTDVRNE QGQAGNDGFL DFASVPFLSQ NRRQ |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp5g27440 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC189575 | 1e-176 | AC189575.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH011C10, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009104862.1 | 1e-119 | PREDICTED: agamous-like MADS-box protein AGL61 | ||||
Refseq | XP_013651170.1 | 1e-119 | agamous-like MADS-box protein AGL61 | ||||
TrEMBL | A0A397YVN8 | 1e-118 | A0A397YVN8_BRACM; Uncharacterized protein | ||||
STRING | Bra003884.1-P | 1e-118 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4697 | 20 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72350.1 | 1e-81 | M-type_MADS family protein |