PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp5g26300
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family ERF
Protein Properties Length: 168aa    MW: 18606.1 Da    PI: 10.5531
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp5g26300genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.15.8e-2079133155
        AP2   1 sgykGVrwdkkrgrWvAeIrdpse.ngkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                ++++GVr+++ +g+W+AeIr+ +   g+r r +lg+f+taeeAa a+++a+ +l g
  Tp5g26300  79 KKFRGVRQRP-WGKWAAEIRCGRAlKGRRDRLWLGTFDTAEEAALAYDNAAIQLIG 133
                59********.**********54433367**********************99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0381232.1E-361167IPR017392AP2/ERF transcription factor ERF/PTI6
CDDcd000183.63E-2479140No hitNo description
PROSITE profilePS5103221.4380141IPR001471AP2/ERF domain
PfamPF008475.4E-1480133IPR001471AP2/ERF domain
SMARTSM003802.2E-3080147IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.2E-2780140IPR001471AP2/ERF domain
SuperFamilySSF541711.5E-1980141IPR016177DNA-binding domain
PRINTSPR003672.3E-118192IPR001471AP2/ERF domain
PRINTSPR003672.3E-11107123IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 168 aa     Download sequence    Send to blast
MKRIVRISFT DAEATDSSSE EEAEERGGSQ PRRRGKRLVK EIVIDPSDSY NNLDVSKTRF  60
KIRIPAEFLK TTATATGKKK FRGVRQRPWG KWAAEIRCGR ALKGRRDRLW LGTFDTAEEA  120
ALAYDNAAIQ LIGPHAPTNF GFPAVEQSPT ENQEVKMVAG ASAVARGA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-16801401471Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp5g26300
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013618155.11e-89PREDICTED: ethylene-responsive transcription factor ERF070
SwissprotQ9C9954e-89ERF70_ARATH; Ethylene-responsive transcription factor ERF070
TrEMBLA0A0D3APU13e-88A0A0D3APU1_BRAOL; Uncharacterized protein
STRINGBo2g070850.15e-89(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40002359
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71130.12e-65ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]