PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AT1G71130.1 | ||||||||
Common Name | AtERF070, CRF8, ERF070, F23N20.12 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | ERF | ||||||||
Protein Properties | Length: 161aa MW: 17951.3 Da PI: 10.2101 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 63.3 | 5.1e-20 | 77 | 132 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpseng..krkrfslgkfgtaeeAakaaiaarkkleg 55 ++y+GVr+++ +g+WvAeIr+ + + +r r +lg+f taeeAa a+++a kl g AT1G71130.1 77 KKYRGVRQRP-WGKWVAEIRCGRGACkgRRDRLWLGTFNTAEEAALAYDNASIKLIG 132 59********.**********655336566*********************999987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PIRSF | PIRSF038123 | 2.3E-34 | 1 | 159 | IPR017392 | AP2/ERF transcription factor ERF/PTI6 |
CDD | cd00018 | 4.17E-25 | 77 | 139 | No hit | No description |
PROSITE profile | PS51032 | 21.219 | 78 | 140 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.0E-27 | 78 | 139 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.37E-19 | 78 | 140 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 1.5E-14 | 78 | 132 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 6.5E-31 | 78 | 146 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.4E-11 | 79 | 90 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.4E-11 | 106 | 122 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009873 | Biological Process | ethylene-activated signaling pathway | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0000013 | anatomy | cauline leaf | ||||
PO:0000037 | anatomy | shoot apex | ||||
PO:0000230 | anatomy | inflorescence meristem | ||||
PO:0000293 | anatomy | guard cell | ||||
PO:0008019 | anatomy | leaf lamina base | ||||
PO:0009005 | anatomy | root | ||||
PO:0009009 | anatomy | plant embryo | ||||
PO:0009010 | anatomy | seed | ||||
PO:0009025 | anatomy | vascular leaf | ||||
PO:0009029 | anatomy | stamen | ||||
PO:0009030 | anatomy | carpel | ||||
PO:0009031 | anatomy | sepal | ||||
PO:0009032 | anatomy | petal | ||||
PO:0009046 | anatomy | flower | ||||
PO:0009047 | anatomy | stem | ||||
PO:0009052 | anatomy | flower pedicel | ||||
PO:0020030 | anatomy | cotyledon | ||||
PO:0020038 | anatomy | petiole | ||||
PO:0020100 | anatomy | hypocotyl | ||||
PO:0020137 | anatomy | leaf apex | ||||
PO:0025022 | anatomy | collective leaf structure | ||||
PO:0025281 | anatomy | pollen | ||||
PO:0001054 | developmental stage | vascular leaf senescent stage | ||||
PO:0001078 | developmental stage | plant embryo cotyledonary stage | ||||
PO:0001081 | developmental stage | mature plant embryo stage | ||||
PO:0001185 | developmental stage | plant embryo globular stage | ||||
PO:0004507 | developmental stage | plant embryo bilateral stage | ||||
PO:0007064 | developmental stage | LP.12 twelve leaves visible stage | ||||
PO:0007095 | developmental stage | LP.08 eight leaves visible stage | ||||
PO:0007098 | developmental stage | LP.02 two leaves visible stage | ||||
PO:0007103 | developmental stage | LP.10 ten leaves visible stage | ||||
PO:0007115 | developmental stage | LP.04 four leaves visible stage | ||||
PO:0007123 | developmental stage | LP.06 six leaves visible stage | ||||
PO:0007611 | developmental stage | petal differentiation and expansion stage | ||||
PO:0007616 | developmental stage | flowering stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 161 aa Download sequence Send to blast |
MKRIIRISFT DAEATDSSSD EDTEERGGAS QTRRRGKRLV KEIVIDPSDS ADKLDVCKTR 60 FKIRIPAEFL KTAKTEKKYR GVRQRPWGKW VAEIRCGRGA CKGRRDRLWL GTFNTAEEAA 120 LAYDNASIKL IGPHAPTNFG LPAENQEDKT VIGASEVARG A |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 5e-16 | 77 | 141 | 1 | 61 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
2gcc_A | 5e-16 | 77 | 147 | 4 | 70 | ATERF1 |
3gcc_A | 5e-16 | 77 | 147 | 4 | 70 | ATERF1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
At.74176 | 0.0 | flower| root |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
Genevisible | 259750_at | 0.0 | ||||
Expression Atlas | AT1G71130 | - | ||||
AtGenExpress | AT1G71130 | - | ||||
ATTED-II | AT1G71130 | - |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
TAIR | encodes a member of the ERF (ethylene response factor) subfamily B-5 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 7 members in this subfamily. | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Function -- GeneRIF ? help Back to Top | ||||||
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AT1G71130.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Interaction ? help Back to Top | ||||||
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Source | Intact With | |||||
BioGRID | AT1G71130 | |||||
IntAct | Search Q9C995 |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
T-DNA Express | AT1G71130 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC016972 | 0.0 | AC016972.7 Arabidopsis thaliana chromosome 1 BAC F23N20 genomic sequence, complete sequence. | |||
GenBank | AK175578 | 0.0 | AK175578.1 Arabidopsis thaliana mRNA, complete cds, clone: RAFL22-02-J01. | |||
GenBank | AK175683 | 0.0 | AK175683.1 Arabidopsis thaliana mRNA, complete cds, clone: RAFL22-20-F22. | |||
GenBank | AK175740 | 0.0 | AK175740.1 Arabidopsis thaliana mRNA, complete cds, clone: RAFL22-28-P11. | |||
GenBank | AK175774 | 0.0 | AK175774.1 Arabidopsis thaliana mRNA, complete cds, clone: RAFL22-34-K21. | |||
GenBank | AK175931 | 0.0 | AK175931.1 Arabidopsis thaliana mRNA, complete cds, clone: RAFL22-60-G16. | |||
GenBank | AK176043 | 0.0 | AK176043.1 Arabidopsis thaliana mRNA, complete cds, clone: RAFL22-78-J24. | |||
GenBank | AK176144 | 0.0 | AK176144.1 Arabidopsis thaliana mRNA, complete cds, clone: RAFL22-96-F12. | |||
GenBank | AK176280 | 0.0 | AK176280.1 Arabidopsis thaliana mRNA, complete cds, clone: RAFL23-20-P21. | |||
GenBank | BT025618 | 0.0 | BT025618.1 Arabidopsis thaliana At1g71130 mRNA, complete cds. | |||
GenBank | CP002684 | 0.0 | CP002684.1 Arabidopsis thaliana chromosome 1 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_565012.1 | 1e-115 | Integrase-type DNA-binding superfamily protein | ||||
Swissprot | Q9C995 | 1e-116 | ERF70_ARATH; Ethylene-responsive transcription factor ERF070 | ||||
TrEMBL | A0A178WNZ8 | 1e-113 | A0A178WNZ8_ARATH; CRF8 | ||||
STRING | AT1G71130.1 | 1e-114 | (Arabidopsis thaliana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4000 | 23 | 59 | Representative plant | OGRP6 | 16 | 1718 |
Link Out ? help Back to Top | |
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Phytozome | AT1G71130.1 |
Entrez Gene | 843453 |
iHOP | AT1G71130 |
wikigenes | AT1G71130 |