PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp5g24570 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
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Family | NAC | ||||||||
Protein Properties | Length: 269aa MW: 31224.5 Da PI: 6.7976 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 175 | 2.1e-54 | 9 | 134 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelv 100 lppGfrFhPtdeel+v+yL++++ +k++++ ++i+evdiyk++Pw+Lp+k++ +e+ewyfFs+rd+ky++g r+nra+ sgyWkatg+dk+++s ++++v Tp5g24570 9 LPPGFRFHPTDEELIVYYLRNQTMSKPCPV-SIIPEVDIYKFDPWQLPEKTEFGENEWYFFSPRDRKYPNGVRPNRAAVSGYWKATGTDKAIHS-GSSNV 106 79****************************.89***************99999*****************************************.999** PP NAM 101 glkktLvfykgrapkgektdWvmheyrl 128 g+kk Lvfykgr pkg ktdW+mheyrl Tp5g24570 107 GVKKALVFYKGRPPKGIKTDWIMHEYRL 134 **************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.05E-65 | 6 | 161 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 60.701 | 9 | 161 | IPR003441 | NAC domain |
Pfam | PF02365 | 7.5E-27 | 10 | 134 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009825 | Biological Process | multidimensional cell growth | ||||
GO:0009835 | Biological Process | fruit ripening | ||||
GO:0009908 | Biological Process | flower development | ||||
GO:0010150 | Biological Process | leaf senescence | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 269 aa Download sequence Send to blast |
MELNSNTNLP PGFRFHPTDE ELIVYYLRNQ TMSKPCPVSI IPEVDIYKFD PWQLPEKTEF 60 GENEWYFFSP RDRKYPNGVR PNRAAVSGYW KATGTDKAIH SGSSNVGVKK ALVFYKGRPP 120 KGIKTDWIMH EYRLHDSRKA STKRNGSMRL DEWVLCRIYK KRGAGKLLYE KEGLMDEVQI 180 DETTVVTNEV ERGNEEEIMM MTSTKLPRTC SLAHLLEMDY MGPISHILTP FDIHKPDSEG 240 INESGWFGDL QINQDEILNH HRQASMFQF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3swm_A | 5e-71 | 5 | 166 | 16 | 173 | NAC domain-containing protein 19 |
3swm_B | 5e-71 | 5 | 166 | 16 | 173 | NAC domain-containing protein 19 |
3swm_C | 5e-71 | 5 | 166 | 16 | 173 | NAC domain-containing protein 19 |
3swm_D | 5e-71 | 5 | 166 | 16 | 173 | NAC domain-containing protein 19 |
3swp_A | 5e-71 | 5 | 166 | 16 | 173 | NAC domain-containing protein 19 |
3swp_B | 5e-71 | 5 | 166 | 16 | 173 | NAC domain-containing protein 19 |
3swp_C | 5e-71 | 5 | 166 | 16 | 173 | NAC domain-containing protein 19 |
3swp_D | 5e-71 | 5 | 166 | 16 | 173 | NAC domain-containing protein 19 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds to, and transactivates the promoter of the abscisic aldehyde oxidase AAO3. Promotes chlorophyll degradation in leaves by enhancing transcription of AAO3, which leads to increased levels of the senescence-inducing hormone abscisic acid (ABA) (PubMed:25516602). Involved in the control of dehydration in senescing leaves. Binds to the DNA sequence 5'-CACGTAAGT-3' of SAG113 promoter. SAG113 acts as negative regulator of ABA signaling for stomatal closure in leaves, and controls water loss during leaf senescence (PubMed:22184656). Transcription factor of the NAC family involved in senescence. May function in the transition between active cell division and cell expansion (PubMed:16640597). Required for normal seed development and morphology (PubMed:18849494). {ECO:0000269|PubMed:16640597, ECO:0000269|PubMed:18849494, ECO:0000269|PubMed:22184656, ECO:0000269|PubMed:25516602}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00221 | DAP | Transfer from AT1G69490 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp5g24570 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by the heterodimer APETALA3 (AP3)/PISTILLATA (PI) (PubMed:9489703). Induced by senescence (PubMed:22184656, PubMed:24659488, PubMed:25516602). Induced by abscisic acid (ABA) (PubMed:22184656, PubMed:25516602). Induced by ethylene (PubMed:25516602). {ECO:0000269|PubMed:22184656, ECO:0000269|PubMed:24659488, ECO:0000269|PubMed:25516602, ECO:0000269|PubMed:9489703}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KC966750 | 0.0 | KC966750.1 Brassica napus NAC transcription factor 29 (NAC29.1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013590272.1 | 0.0 | PREDICTED: NAC transcription factor 29 | ||||
Refseq | XP_013699213.1 | 0.0 | NAC transcription factor 29 | ||||
Swissprot | O49255 | 1e-174 | NAC29_ARATH; NAC transcription factor 29 | ||||
TrEMBL | A0A0D3CZ93 | 0.0 | A0A0D3CZ93_BRAOL; Uncharacterized protein | ||||
STRING | Bo6g108930.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM7707 | 26 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69490.1 | 1e-177 | NAC-like, activated by AP3/PI |