PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp5g23580 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
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Family | LBD | ||||||||
Protein Properties | Length: 232aa MW: 25513.8 Da PI: 8.22 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 95.5 | 5.5e-30 | 4 | 104 | 1 | 96 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +C++C+vlr++C++dC+++p++ p++q++++ +++k++G++ +l+l+++ p++ r+++++sl+yeA+ r+ +Pv G+vg+++++++ +q++++ + Tp5g23580 4 SCNGCRVLRKGCNQDCTIRPCLqwiksPDSQANATLFLAKFYGRAGLLNLIESGPDHLRPAIFRSLLYEACGRIVNPVDGSVGLMWSGNWAQCQAAVDSV 103 6*********************************************************************************************999876 PP DUF260 96 l 96 l Tp5g23580 104 L 104 5 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 15.737 | 3 | 109 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.4E-23 | 4 | 101 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 232 aa Download sequence Send to blast |
MRISCNGCRV LRKGCNQDCT IRPCLQWIKS PDSQANATLF LAKFYGRAGL LNLIESGPDH 60 LRPAIFRSLL YEACGRIVNP VDGSVGLMWS GNWAQCQAAV DSVLNGLPIT HTPLPSASAS 120 HQIIPPHRTY DIRHVAKDPT TGGDSSQSLP LAPRVNGSKT KTQTGRFKRL ADETVNYQLG 180 ECSHDTWQHQ SSGQFALETV ESRREAPLNR SSNLGFYDQV DINEVGLELR LG |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp5g23580 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB473869 | 1e-161 | AB473869.1 Arabidopsis thaliana ASL36 mRNA for ASYMMETRIC LEAVES2-like 36 protein, complete cds. | |||
GenBank | AF447896 | 1e-161 | AF447896.1 Arabidopsis thaliana LOB DOMAIN 42 (LBD42) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006391131.1 | 1e-153 | LOB domain-containing protein 42 | ||||
Swissprot | Q9CA30 | 1e-146 | LBD42_ARATH; LOB domain-containing protein 42 | ||||
TrEMBL | V4KF16 | 1e-152 | V4KF16_EUTSA; Uncharacterized protein | ||||
STRING | XP_006391131.1 | 1e-153 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM8463 | 26 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68510.1 | 1e-148 | LOB domain-containing protein 42 |